Analysis of interatomic Contacts of Structural Units in PDB entry:
4DDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DDG entry

There are 4 chains in PDB entry 4DDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY -1LYS 1271
B
GLY -1LYS 1271
C
GLY -1LYS 1271
D
MET 1GLN 41
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are132 helices in PDB entry 4DDG. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
-1 16Right-handed alpha
Helix 2
2
A
86 90Right-handed 310
Helix 3
3
A
98 112Right-handed alpha
Helix 4
4
A
120 130Right-handed alpha
Helix 5
5
A
130 146Right-handed alpha
Helix 6
6
A
150 1045Right-handed alpha
Helix 7
7
A
1056 1061Right-handed alpha
Helix 8
8
A
1065 1079Right-handed alpha
Helix 9
9
A
1090 1104Right-handed alpha
Helix 10
10
A
1107 1128Right-handed alpha
Helix 11
11
A
1131 1151Right-handed alpha
Helix 12
12
A
1154 1163Right-handed alpha
Helix 13
13
A
1164 1186Right-handed alpha
Helix 14
14
A
1186 1191Right-handed alpha
Helix 15
15
A
1192 1194Right-handed 310
Helix 16
16
A
1199 1208Right-handed alpha
Helix 17
17
A
1216 1228Right-handed alpha
Helix 18
18
B
0 16Right-handed alpha
Helix 19
19
B
86 90Right-handed 310
Helix 20
20
B
98 112Right-handed alpha
Helix 21
21
B
120 130Right-handed alpha
Helix 22
22
B
130 146Right-handed alpha
Helix 23
23
B
150 1045Right-handed alpha
Helix 24
24
B
1056 1061Right-handed alpha
Helix 25
25
B
1065 1079Right-handed alpha
Helix 26
26
B
1090 1104Right-handed alpha
Helix 27
27
B
1107 1128Right-handed alpha
Helix 28
28
B
1131 1151Right-handed alpha
Helix 29
29
B
1154 1163Right-handed alpha
Helix 30
30
B
1164 1186Right-handed alpha
Helix 31
31
B
1186 1191Right-handed alpha
Helix 32
32
B
1192 1194Right-handed 310
Helix 33
33
B
1199 1208Right-handed alpha
Helix 34
34
B
1216 1228Right-handed alpha
Helix 35
35
C
0 16Right-handed alpha
Helix 36
36
C
86 90Right-handed 310
Helix 37
37
C
98 112Right-handed alpha
Helix 38
38
C
120 130Right-handed alpha
Helix 39
39
C
130 146Right-handed alpha
Helix 40
40
C
150 1045Right-handed alpha
Helix 41
41
C
1056 1061Right-handed alpha
Helix 42
42
C
1065 1079Right-handed alpha
Helix 43
43
C
1090 1104Right-handed alpha
Helix 44
44
C
1107 1128Right-handed alpha
Helix 45
45
C
1131 1151Right-handed alpha
Helix 46
46
C
1154 1163Right-handed alpha
Helix 47
47
C
1164 1186Right-handed alpha
Helix 48
48
C
1186 1191Right-handed alpha
Helix 49
49
C
1192 1194Right-handed 310
Helix 50
50
C
1199 1208Right-handed alpha
Helix 51
51
C
1216 1228Right-handed alpha
Helix 52
52
D
22 35Right-handed alpha
Helix 53
53
D
37 39Right-handed 310
Helix 54
54
E
22 35Right-handed alpha
Helix 55
55
E
37 39Right-handed 310
Helix 56
56
F
22 35Right-handed alpha
Helix 57
57
F
37 39Right-handed 310
Helix 58
58
G
22 35Right-handed alpha
Helix 59
59
G
37 39Right-handed 310
Helix 60
60
G
55 60Right-handed 310
Helix 61
61
H
22 35Right-handed alpha
Helix 62
62
H
37 39Right-handed 310
Helix 63
63
H
55 60Right-handed 310
Helix 64
64
I
22 35Right-handed alpha
Helix 65
65
I
37 39Right-handed 310
Helix 66
66
I
55 60Right-handed 310
Helix 67
67
J
0 16Right-handed alpha
Helix 68
68
J
86 90Right-handed 310
Helix 69
69
J
98 112Right-handed alpha
Helix 70
70
J
120 130Right-handed alpha
Helix 71
71
J
130 146Right-handed alpha
Helix 72
72
J
150 1045Right-handed alpha
Helix 73
73
J
1056 1061Right-handed alpha
Helix 74
74
J
1065 1079Right-handed alpha
Helix 75
75
J
1090 1104Right-handed alpha
Helix 76
76
J
1107 1128Right-handed alpha
Helix 77
77
J
1131 1151Right-handed alpha
Helix 78
78
J
1154 1163Right-handed alpha
Helix 79
79
J
1164 1186Right-handed alpha
Helix 80
80
J
1186 1191Right-handed alpha
Helix 81
81
J
1192 1194Right-handed 310
Helix 82
82
J
1199 1208Right-handed alpha
Helix 83
83
J
1216 1228Right-handed alpha
Helix 84
84
K
0 16Right-handed alpha
Helix 85
85
K
86 90Right-handed 310
Helix 86
86
K
98 112Right-handed alpha
Helix 87
87
K
120 130Right-handed alpha
Helix 88
88
K
130 146Right-handed alpha
Helix 89
89
K
150 1045Right-handed alpha
Helix 90
90
K
1056 1061Right-handed alpha
Helix 91
91
K
1065 1079Right-handed alpha
Helix 92
92
K
1090 1104Right-handed alpha
Helix 93
93
K
1107 1128Right-handed alpha
Helix 94
94
K
1131 1151Right-handed alpha
Helix 95
95
K
1154 1163Right-handed alpha
Helix 96
96
K
1164 1186Right-handed alpha
Helix 97
97
K
1186 1191Right-handed alpha
Helix 98
98
K
1192 1194Right-handed 310
Helix 99
99
K
1199 1208Right-handed alpha
Helix 100
100
K
1216 1228Right-handed alpha
Helix 101
101
L
0 16Right-handed alpha
Helix 102
102
L
86 90Right-handed 310
Helix 103
103
L
98 112Right-handed alpha
Helix 104
104
L
120 130Right-handed alpha
Helix 105
105
L
130 146Right-handed alpha
Helix 106
106
L
1025 1045Right-handed alpha
Helix 107
107
L
1056 1061Right-handed alpha
Helix 108
108
L
1065 1079Right-handed alpha
Helix 109
109
L
1090 1104Right-handed alpha
Helix 110
110
L
1107 1128Right-handed alpha
Helix 111
111
L
1131 1151Right-handed alpha
Helix 112
112
L
1154 1163Right-handed alpha
Helix 113
113
L
1164 1186Right-handed alpha
Helix 114
114
L
1186 1191Right-handed alpha
Helix 115
115
L
1192 1194Right-handed 310
Helix 116
116
L
1199 1208Right-handed alpha
Helix 117
117
L
1216 1228Right-handed alpha
Helix 118
118
M
22 35Right-handed alpha
Helix 119
119
M
37 39Right-handed 310
Helix 120
120
N
22 35Right-handed alpha
Helix 121
121
N
37 39Right-handed 310
Helix 122
122
O
22 35Right-handed alpha
Helix 123
123
O
37 39Right-handed 310
Helix 124
124
P
22 35Right-handed alpha
Helix 125
125
P
37 39Right-handed 310
Helix 126
126
P
55 60Right-handed 310
Helix 127
127
Q
22 35Right-handed alpha
Helix 128
128
Q
37 39Right-handed 310
Helix 129
129
Q
55 60Right-handed 310
Helix 130
130
R
22 35Right-handed alpha
Helix 131
131
R
37 39Right-handed 310
Helix 132
132
R
55 60Right-handed 310
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There are 24 sheets in PDB entry 4DDG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
21 26first strand
Strand 2
A
29 38anti-parallel
Strand 3
A
49 55anti-parallel
Strand 4
A
66 69anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1052 1053first strand
Strand 2
A
1081 1083anti-parallel
Strand 3
A
1265 1270anti-parallel
Strand 4
A
1258 1262anti-parallel
Strand 5
A
1232 1235parallel
Strand 6
A
1246 1248anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
21 26first strand
Strand 2
B
29 38anti-parallel
Strand 3
B
49 55anti-parallel
Strand 4
B
66 69anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1052 1053first strand
Strand 2
B
1081 1083anti-parallel
Strand 3
B
1265 1270anti-parallel
Strand 4
B
1258 1262anti-parallel
Strand 5
B
1232 1235parallel
Strand 6
B
1246 1248anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
21 26first strand
Strand 2
C
29 38anti-parallel
Strand 3
C
49 55anti-parallel
Strand 4
C
66 69anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1052 1053first strand
Strand 2
C
1081 1083anti-parallel
Strand 3
C
1265 1270anti-parallel
Strand 4
C
1258 1262anti-parallel
Strand 5
C
1232 1235parallel
Strand 6
C
1246 1248anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 7anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
12 16first strand
Strand 2
E
2 7anti-parallel
Strand 3
E
66 71parallel
Strand 4
E
41 45anti-parallel
Strand 5
E
48 49anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
12 16first strand
Strand 2
F
2 7anti-parallel
Strand 3
F
66 71parallel
Strand 4
F
41 45anti-parallel
Strand 5
F
48 49anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
12 16first strand
Strand 2
G
2 6anti-parallel
Strand 3
G
66 71parallel
Strand 4
G
41 45anti-parallel
Strand 5
G
48 49anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
12 16first strand
Strand 2
H
2 6anti-parallel
Strand 3
H
66 71parallel
Strand 4
H
41 45anti-parallel
Strand 5
H
48 49anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
12 16first strand
Strand 2
I
2 6anti-parallel
Strand 3
I
66 71parallel
Strand 4
I
41 45anti-parallel
Strand 5
I
48 49anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
21 26first strand
Strand 2
J
29 38anti-parallel
Strand 3
J
49 55anti-parallel
Strand 4
J
66 69anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
1052 1053first strand
Strand 2
J
1081 1083anti-parallel
Strand 3
J
1265 1270anti-parallel
Strand 4
J
1258 1262anti-parallel
Strand 5
J
1232 1235parallel
Strand 6
J
1246 1248anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
21 26first strand
Strand 2
K
29 38anti-parallel
Strand 3
K
49 55anti-parallel
Strand 4
K
66 69anti-parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
1052 1053first strand
Strand 2
K
1081 1083anti-parallel
Strand 3
K
1265 1270anti-parallel
Strand 4
K
1258 1262anti-parallel
Strand 5
K
1232 1235parallel
Strand 6
K
1246 1248anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
21 26first strand
Strand 2
L
29 38anti-parallel
Strand 3
L
49 55anti-parallel
Strand 4
L
66 69anti-parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
1052 1053first strand
Strand 2
L
1081 1083anti-parallel
Strand 3
L
1265 1270anti-parallel
Strand 4
L
1258 1262anti-parallel
Strand 5
L
1232 1235parallel
Strand 6
L
1246 1248anti-parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
12 16first strand
Strand 2
M
2 7anti-parallel
Strand 3
M
66 71parallel
Strand 4
M
41 45anti-parallel
Strand 5
M
48 49anti-parallel
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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
12 16first strand
Strand 2
N
2 7anti-parallel
Strand 3
N
66 71parallel
Strand 4
N
41 45anti-parallel
Strand 5
N
48 49anti-parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
12 16first strand
Strand 2
O
2 7anti-parallel
Strand 3
O
66 71parallel
Strand 4
O
41 45anti-parallel
Strand 5
O
48 49anti-parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
12 16first strand
Strand 2
P
2 6anti-parallel
Strand 3
P
66 71parallel
Strand 4
P
41 45anti-parallel
Strand 5
P
48 49anti-parallel
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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
12 16first strand
Strand 2
Q
2 6anti-parallel
Strand 3
Q
66 71parallel
Strand 4
Q
41 45anti-parallel
Strand 5
Q
48 49anti-parallel
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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
12 16first strand
Strand 2
R
2 6anti-parallel
Strand 3
R
66 71parallel
Strand 4
R
41 45anti-parallel
Strand 5
R
48 49anti-parallel
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