Analysis of interatomic Contacts of Structural Units in PDB entry:
4DMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DMW entry

There is 1 chain in PDB entry 4DMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2THR 538
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4DMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 13Right-handed alpha
Helix 2
2
A
20 35Right-handed alpha
Helix 3
3
A
40 62Right-handed alpha
Helix 4
4
A
67 87Right-handed alpha
Helix 5
5
A
107 121Right-handed alpha
Helix 6
6
A
136 161Right-handed alpha
Helix 7
7
A
166 193Right-handed alpha
Helix 8
8
A
200 213Right-handed alpha
Helix 9
9
A
216 233Right-handed alpha
Helix 10
10
A
247 259Right-handed alpha
Helix 11
11
A
263 280Right-handed alpha
Helix 12
12
A
307 324Right-handed alpha
Helix 13
13
A
333 337Right-handed 310
Helix 14
14
A
338 350Right-handed alpha
Helix 15
15
A
354 358Right-handed 310
Helix 16
16
A
392 419Right-handed alpha
Helix 17
17
A
422 436Right-handed alpha
Helix 18
18
A
442 450Right-handed alpha
Helix 19
19
A
451 455Right-handed 310
Helix 20
20
A
462 466Right-handed 310
Helix 21
21
A
469 482Right-handed alpha
Helix 22
22
A
493 498Right-handed alpha
Helix 23
23
A
499 501Right-handed 310
Helix 24
24
A
503 507Right-handed 310
Helix 25
25
A
511 517Right-handed alpha
Helix 26
26
A
522 536Right-handed alpha
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There are 2 sheets in PDB entry 4DMW. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
366 368anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 238first strand
Strand 2
A
125 130parallel
Strand 3
A
96 100parallel
Strand 4
A
281 284parallel
Strand 5
A
380 388anti-parallel
Strand 6
A
372 377anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il