Analysis of interatomic Contacts of Structural Units in PDB entry:
4DPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DPV entry

There are 2 chains in PDB entry 4DPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
N
 A 1 C 11
Z
 GLY 22TYR 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 4DPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
BC2
Z
86 90Right-handed alpha
Helix 2
CD1
Z
116 121Right-handed alpha
Helix 3
CD2
Z
122 133Right-handed alpha
Helix 4
EF1
Z
187 192Right-handed 310
Helix 5
EF6
Z
245 250Right-handed alpha
Helix 6
GH5
Z
381 385Right-handed 310
Helix 7
GH7
Z
409 413Right-handed 310
Helix 8
G10
Z
443 447Right-handed 310
Helix 9
I2
Z
557 562Right-handed 310
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There are 9 sheets in PDB entry 4DPV. Click on sheet of interest to get list of strands forming it: BDG, BID, BIG, CHF, BCE, EF, GH1, GH2, GH3,

There are 5 strands in BDG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
48 54first strand
Strand 2
Z
57 73anti-parallel
Strand 3
Z
522 540anti-parallel
Strand 4
Z
132 150anti-parallel
Strand 5
Z
261 268anti-parallel
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There are 5 strands in BID sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
48 54first strand
Strand 2
Z
57 73anti-parallel
Strand 3
Z
522 540anti-parallel
Strand 4
Z
132 150anti-parallel
Strand 5
Z
273 275anti-parallel
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There are 5 strands in BIG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
48 54first strand
Strand 2
Z
57 73anti-parallel
Strand 3
Z
522 540anti-parallel
Strand 4
Z
132 154anti-parallel
Strand 5
Z
164 168anti-parallel
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There are 5 strands in CHF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
206 208first strand
Strand 2
Z
109 112anti-parallel
Strand 3
Z
497 503anti-parallel
Strand 4
Z
172 178anti-parallel
Strand 5
Z
251 255anti-parallel
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There are 3 strands in BCE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
80 84first strand
Strand 2
Z
102 107anti-parallel
Strand 3
Z
208 212anti-parallel
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There are 2 strands in EF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
215 219first strand
Strand 2
Z
230 234anti-parallel
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There are 2 strands in GH1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
351 355first strand
Strand 2
Z
343 348anti-parallel
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There are 2 strands in GH2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
396 400first strand
Strand 2
Z
376 380anti-parallel
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There are 2 strands in GH3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
469 471first strand
Strand 2
Z
488 490parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il