Analysis of interatomic Contacts of Structural Units in PDB entry:
4E5Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4E5Z entry

There are 2 chains in PDB entry 4E5Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
HIS 1HIS 1140
B
ARG 20ASN 168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4E5Z. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
381 384Right-handed 310
Helix 2
2
A
728 730Right-handed 310
Helix 3
3
A
987 989Right-handed 310
Helix 4
4
A
1044 1059Right-handed alpha
Helix 5
5
A
1069 1075Right-handed alpha
Helix 6
6
A
1091 1096Right-handed alpha
Helix 7
7
A
1101 1110Right-handed alpha
Helix 8
8
A
1123 1127Right-handed 310
Helix 9
9
A
1128 1138Right-handed alpha
Helix 10
10
B
38 43Right-handed alpha
Helix 11
11
B
71 78Right-handed alpha
Helix 12
12
B
82 91Right-handed alpha
Helix 13
13
B
97 101Right-handed 310
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There are 30 sheets in PDB entry 4E5Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1004 1009first strand
Strand 2
A
1025 1032anti-parallel
Strand 3
A
1037 1042anti-parallel
Strand 4
A
4 10anti-parallel
Strand 5
A
1088 1090parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 21first strand
Strand 2
A
30 35anti-parallel
Strand 3
A
38 45anti-parallel
Strand 4
A
48 56anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
61 67first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
85 94anti-parallel
Strand 4
A
97 107anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
121 123first strand
Strand 2
A
130 134anti-parallel
Strand 3
A
141 144anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
164 169first strand
Strand 2
A
177 184anti-parallel
Strand 3
A
187 196anti-parallel
Strand 4
A
201 204anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
218 221first strand
Strand 2
A
229 232anti-parallel
Strand 3
A
237 240anti-parallel
Strand 4
A
245 248anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
258 260first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
279 287anti-parallel
Strand 4
A
297 301anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
258 260first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
279 287anti-parallel
Strand 4
A
306 307anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
313 316first strand
Strand 2
A
321 325anti-parallel
Strand 3
A
331 336anti-parallel
Strand 4
A
347 353anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
363 364first strand
Strand 2
A
376 379anti-parallel
Strand 3
A
386 392anti-parallel
Strand 4
A
710 716anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
407 413first strand
Strand 2
A
423 429anti-parallel
Strand 3
A
433 436anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
462 463first strand
Strand 2
A
467 470anti-parallel
Strand 3
A
476 479anti-parallel
Strand 4
A
489 490anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
541 542first strand
Strand 2
A
555 558anti-parallel
Strand 3
A
567 570anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
591 592first strand
Strand 2
A
603 604anti-parallel
Strand 3
A
611 617anti-parallel
Strand 4
A
622 629anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
595 596first strand
Strand 2
A
599 600anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
659 662first strand
Strand 2
A
665 668anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
679 684first strand
Strand 2
A
687 693anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
720 727first strand
Strand 2
A
732 740anti-parallel
Strand 3
A
787 795anti-parallel
Strand 4
A
801 806anti-parallel
Strand 5
A
764 765parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
811 820first strand
Strand 2
A
827 835anti-parallel
Strand 3
A
846 852anti-parallel
Strand 4
A
859 860anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
811 820first strand
Strand 2
A
827 835anti-parallel
Strand 3
A
846 852anti-parallel
Strand 4
A
864 866anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
870 876first strand
Strand 2
A
879 884anti-parallel
Strand 3
A
887 893anti-parallel
Strand 4
A
899 905anti-parallel
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There are 8 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
911 917first strand
Strand 2
A
920 925anti-parallel
Strand 3
A
929 933anti-parallel
Strand 4
A
944 948anti-parallel
Strand 5
A
991 999parallel
Strand 6
A
973 978anti-parallel
Strand 7
A
964 969anti-parallel
Strand 8
A
954 959anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1076 1077first strand
Strand 2
A
1082 1083anti-parallel
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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
104 107first strand
Strand 2
B
414 418anti-parallel
Strand 3
B
407 411anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
114 119first strand
Strand 2
B
126 131anti-parallel
Strand 3
B
136 140anti-parallel
Strand 4
B
148 150anti-parallel
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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
159 164first strand
Strand 2
B
171 176anti-parallel
Strand 3
B
181 185anti-parallel
Strand 4
B
190 195anti-parallel
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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
207 210first strand
Strand 2
B
215 218anti-parallel
Strand 3
B
226 228anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
247 251first strand
Strand 2
B
255 262anti-parallel
Strand 3
B
266 267anti-parallel
Strand 4
B
285 286anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
312 315first strand
Strand 2
B
323 327anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
343 344first strand
Strand 2
B
350 354anti-parallel
Strand 3
B
372 376anti-parallel
Strand 4
B
382 386anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il