Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 4EAX entry
There are 4 chains in PDB entry 4EAX
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
GLY 10 | THR 117 |
B
|
GLY 10 | THR 117 |
C
|
GLY 10 | THR 117 |
D
|
GLY 10 | THR 117 |
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There are no helices in PDB entry
4EAX
There are
13 sheets in PDB entry 4EAX. Click on sheet of
interest to get list of strands forming it:
A,
B,
C,
D,
E,
F,
G,
H,
I,
J,
K,
L,
M,
There are 5
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 12 |
13 | first strand |
Strand 2 |
B
| 97 |
114 | anti-parallel |
Strand 3 |
B
| 76 |
92 | anti-parallel |
Strand 4 |
B
| 35 |
38 | anti-parallel |
Strand 5 |
B
| 27 |
29 | anti-parallel |
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There are 2
strands in B sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 17 |
22 | first strand |
Strand 2 |
A
| 53 |
58 | anti-parallel |
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There are 4
strands in C sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 27 |
29 | first strand |
Strand 2 |
A
| 35 |
38 | anti-parallel |
Strand 3 |
A
| 81 |
92 | anti-parallel |
Strand 4 |
A
| 97 |
109 | anti-parallel |
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There are 2
strands in D sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 41 |
44 | first strand |
Strand 2 |
A
| 47 |
50 | anti-parallel |
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There are 3
strands in E sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 76 |
78 | first strand |
Strand 2 |
A
| 111 |
114 | anti-parallel |
Strand 3 |
B
| 11 |
13 | anti-parallel |
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There are 2
strands in F sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
B
| 17 |
22 | first strand |
Strand 2 |
B
| 53 |
58 | anti-parallel |
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There are 2
strands in G sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
B
| 41 |
43 | first strand |
Strand 2 |
B
| 48 |
50 | anti-parallel |
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There are 5
strands in H sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
C
| 12 |
13 | first strand |
Strand 2 |
D
| 97 |
114 | anti-parallel |
Strand 3 |
D
| 76 |
92 | anti-parallel |
Strand 4 |
D
| 35 |
38 | anti-parallel |
Strand 5 |
D
| 27 |
29 | anti-parallel |
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There are 2
strands in I sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
C
| 17 |
22 | first strand |
Strand 2 |
C
| 53 |
58 | anti-parallel |
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There are 4
strands in J sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
C
| 27 |
29 | first strand |
Strand 2 |
C
| 35 |
38 | anti-parallel |
Strand 3 |
C
| 76 |
92 | anti-parallel |
Strand 4 |
C
| 97 |
114 | anti-parallel |
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There are 2
strands in K sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
C
| 41 |
44 | first strand |
Strand 2 |
C
| 47 |
50 | anti-parallel |
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There are 2
strands in L sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
D
| 17 |
22 | first strand |
Strand 2 |
D
| 53 |
58 | anti-parallel |
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There are 2
strands in M sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
D
| 41 |
44 | first strand |
Strand 2 |
D
| 47 |
50 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il