Analysis of interatomic Contacts of Structural Units in PDB entry:
4EDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EDY entry

There are 2 chains in PDB entry 4EDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 2LEU 199
B
HIS 1LEU 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4EDY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
15 25Right-handed alpha
Helix 3
3
A
35 37Right-handed 310
Helix 4
4
A
38 43Right-handed alpha
Helix 5
5
A
44 46Right-handed 310
Helix 6
6
A
63 73Right-handed alpha
Helix 7
7
A
81 102Right-handed alpha
Helix 8
8
A
108 122Right-handed alpha
Helix 9
9
A
122 136Right-handed alpha
Helix 10
10
A
147 164Right-handed alpha
Helix 11
11
A
171 184Right-handed alpha
Helix 12
12
A
184 194Right-handed alpha
Helix 13
13
B
12 14Right-handed 310
Helix 14
14
B
15 25Right-handed alpha
Helix 15
15
B
35 37Right-handed 310
Helix 16
16
B
38 44Right-handed alpha
Helix 17
17
B
63 73Right-handed alpha
Helix 18
18
B
81 102Right-handed alpha
Helix 19
19
B
110 123Right-handed alpha
Helix 20
20
B
123 136Right-handed alpha
Helix 21
21
B
147 164Right-handed alpha
Helix 22
22
B
171 184Right-handed alpha
Helix 23
23
B
184 194Right-handed alpha
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There are 2 sheets in PDB entry 4EDY. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
30 33first strand
Strand 2
A
4 8parallel
Strand 3
A
53 56anti-parallel
Strand 4
A
59 62anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
30 34first strand
Strand 2
B
4 9parallel
Strand 3
B
53 56anti-parallel
Strand 4
B
59 62anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il