Analysis of interatomic Contacts of Structural Units in PDB entry:
4EDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EDZ entry

There are 4 chains in PDB entry 4EDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 2LEU 199
B
ALA 1LEU 199
C
PRO 2LEU 199
D
ALA 1LEU 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 4EDZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
15 25Right-handed alpha
Helix 3
3
A
38 44Right-handed alpha
Helix 4
4
A
63 73Right-handed alpha
Helix 5
5
A
81 102Right-handed alpha
Helix 6
6
A
108 123Right-handed alpha
Helix 7
7
A
123 136Right-handed alpha
Helix 8
8
A
147 164Right-handed alpha
Helix 9
9
A
171 184Right-handed alpha
Helix 10
10
A
184 194Right-handed alpha
Helix 11
11
B
12 14Right-handed 310
Helix 12
12
B
15 26Right-handed alpha
Helix 13
13
B
35 37Right-handed 310
Helix 14
14
B
38 46Right-handed alpha
Helix 15
15
B
63 73Right-handed alpha
Helix 16
16
B
81 101Right-handed alpha
Helix 17
17
B
110 122Right-handed alpha
Helix 18
18
B
122 136Right-handed alpha
Helix 19
19
B
147 164Right-handed alpha
Helix 20
20
B
171 183Right-handed alpha
Helix 21
21
B
184 194Right-handed alpha
Helix 22
22
C
12 14Right-handed 310
Helix 23
23
C
15 25Right-handed alpha
Helix 24
24
C
35 37Right-handed 310
Helix 25
25
C
38 44Right-handed alpha
Helix 26
26
C
63 73Right-handed alpha
Helix 27
27
C
81 101Right-handed alpha
Helix 28
28
C
108 122Right-handed alpha
Helix 29
29
C
122 136Right-handed alpha
Helix 30
30
C
147 164Right-handed alpha
Helix 31
31
C
171 184Right-handed alpha
Helix 32
32
C
184 194Right-handed alpha
Helix 33
33
D
12 14Right-handed 310
Helix 34
34
D
15 26Right-handed alpha
Helix 35
35
D
35 37Right-handed 310
Helix 36
36
D
38 44Right-handed alpha
Helix 37
37
D
63 73Right-handed alpha
Helix 38
38
D
81 100Right-handed alpha
Helix 39
39
D
108 123Right-handed alpha
Helix 40
40
D
123 136Right-handed alpha
Helix 41
41
D
147 164Right-handed alpha
Helix 42
42
D
171 184Right-handed alpha
Helix 43
43
D
184 194Right-handed alpha
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There are 4 sheets in PDB entry 4EDZ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
30 34first strand
Strand 2
A
4 9parallel
Strand 3
A
53 56anti-parallel
Strand 4
A
59 62anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
30 34first strand
Strand 2
B
4 9parallel
Strand 3
B
53 56anti-parallel
Strand 4
B
59 62anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
30 34first strand
Strand 2
C
4 9parallel
Strand 3
C
53 56anti-parallel
Strand 4
C
59 62anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
30 34first strand
Strand 2
D
4 9parallel
Strand 3
D
53 56anti-parallel
Strand 4
D
59 62anti-parallel
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