Analysis of interatomic Contacts of Structural Units in PDB entry:
4EFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EFB entry

There is 1 chain in PDB entry 4EFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5PRO 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 4EFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 31Right-handed alpha
Helix 2
2
A
38 56Right-handed alpha
Helix 3
3
A
57 60Right-handed 310
Helix 4
4
A
64 70Right-handed 310
Helix 5
5
A
94 110Right-handed alpha
Helix 6
6
A
150 156Right-handed alpha
Helix 7
7
A
179 194Right-handed alpha
Helix 8
8
A
200 209Right-handed alpha
Helix 9
9
A
213 219Right-handed alpha
Helix 10
10
A
239 250Right-handed alpha
Helix 11
11
A
263 277Right-handed alpha
Helix 12
12
A
278 281Right-handed 310
Helix 13
13
A
294 302Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4EFB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
146 148anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
311 315parallel
Strand 3
A
285 292anti-parallel
Strand 4
A
115 121anti-parallel
Strand 5
A
259 261anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 140first strand
Strand 2
A
124 131anti-parallel
Strand 3
A
170 177anti-parallel
Strand 4
A
223 231anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il