Analysis of interatomic Contacts of Structural Units in PDB entry:
4EGA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EGA entry

There are 6 chains in PDB entry 4EGA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 238LYS 317
A
PHE 319HIS 469
A
VAL 471GLU 768
B
GLY -4LYS 317
B
PHE 319HIS 469
B
VAL 471THR 767
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 4EGA. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
258 276Right-handed alpha
Helix 2
2
A
290 300Right-handed alpha
Helix 3
3
A
303 322Right-handed alpha
Helix 4
4
A
334 351Right-handed alpha
Helix 5
5
A
372 374Right-handed 310
Helix 6
6
A
409 411Right-handed 310
Helix 7
7
A
412 423Right-handed alpha
Helix 8
8
A
429 443Right-handed alpha
Helix 9
9
A
472 486Right-handed alpha
Helix 10
10
A
501 506Right-handed 310
Helix 11
11
A
519 525Right-handed alpha
Helix 12
12
A
525 535Right-handed alpha
Helix 13
13
A
564 573Right-handed alpha
Helix 14
14
A
573 585Right-handed alpha
Helix 15
15
A
594 605Right-handed alpha
Helix 16
16
A
609 619Right-handed alpha
Helix 17
17
A
635 658Right-handed alpha
Helix 18
18
A
660 683Right-handed alpha
Helix 19
19
A
683 691Right-handed alpha
Helix 20
20
A
691 714Right-handed alpha
Helix 21
21
A
717 729Right-handed alpha
Helix 22
22
A
731 736Right-handed 310
Helix 23
23
A
737 742Right-handed 310
Helix 24
24
B
256 277Right-handed alpha
Helix 25
25
B
290 301Right-handed alpha
Helix 26
26
B
303 322Right-handed alpha
Helix 27
27
B
334 351Right-handed alpha
Helix 28
28
B
409 411Right-handed 310
Helix 29
29
B
412 423Right-handed alpha
Helix 30
30
B
429 443Right-handed alpha
Helix 31
31
B
472 478Right-handed alpha
Helix 32
32
B
479 486Right-handed alpha
Helix 33
33
B
501 506Right-handed 310
Helix 34
34
B
519 525Right-handed alpha
Helix 35
35
B
525 535Right-handed alpha
Helix 36
36
B
564 573Right-handed alpha
Helix 37
37
B
573 585Right-handed alpha
Helix 38
38
B
594 605Right-handed alpha
Helix 39
39
B
609 619Right-handed alpha
Helix 40
40
B
635 658Right-handed alpha
Helix 41
41
B
660 683Right-handed alpha
Helix 42
42
B
683 691Right-handed alpha
Helix 43
43
B
691 714Right-handed alpha
Helix 44
44
B
717 729Right-handed alpha
Helix 45
45
B
731 736Right-handed 310
Helix 46
46
B
737 742Right-handed 310
Back to top of page

There are 11 sheets in PDB entry 4EGA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
328 331first strand
Strand 2
A
280 287parallel
Strand 3
A
242 250parallel
Strand 4
A
512 516parallel
Strand 5
A
542 545parallel
Strand 6
A
427 428parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
369 371first strand
Strand 2
A
354 364anti-parallel
Strand 3
A
397 407anti-parallel
Strand 4
A
447 448anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
376 380first strand
Strand 2
A
386 390anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
450 452first strand
Strand 2
A
466 471anti-parallel
Strand 3
A
462 463anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
487 489first strand
Strand 2
A
495 498anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
328 331first strand
Strand 2
B
280 287parallel
Strand 3
B
242 250parallel
Strand 4
B
512 516parallel
Strand 5
B
541 545parallel
Strand 6
B
427 428parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
369 371first strand
Strand 2
B
354 364anti-parallel
Strand 3
B
398 407anti-parallel
Strand 4
B
447 448anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
376 377first strand
Strand 2
B
389 390anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
450 452first strand
Strand 2
B
466 471anti-parallel
Strand 3
B
461 463anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
487 489first strand
Strand 2
B
495 498anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
548 550first strand
Strand 2
B
591 593parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il