Analysis of interatomic Contacts of Structural Units in PDB entry:
4F0Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4F0Q entry

There are 4 chains in PDB entry 4F0Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 5	LEU 456
B	LYS 5	LEU 456
C	ILE 8	LEU 456
D	TRP 10	LEU 456

There are 72 helices in PDB entry 4F0Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	5	18	Right-handed alpha
Helix 2	2	A	48	53	Right-handed alpha
Helix 3	3	A	54	58	Right-handed 310
Helix 4	4	A	92	96	Right-handed 310
Helix 5	5	A	129	143	Right-handed alpha
Helix 6	6	A	146	151	Right-handed alpha
Helix 7	7	A	221	228	Right-handed alpha
Helix 8	8	A	233	237	Right-handed 310
Helix 9	9	A	242	252	Right-handed alpha
Helix 10	10	A	255	259	Right-handed 310
Helix 11	11	A	270	275	Right-handed alpha
Helix 12	12	A	280	293	Right-handed alpha
Helix 13	13	A	296	315	Right-handed alpha
Helix 14	14	A	366	375	Right-handed alpha
Helix 15	15	A	392	402	Right-handed alpha
Helix 16	16	A	410	426	Right-handed alpha
Helix 17	17	A	429	441	Right-handed alpha
Helix 18	18	A	442	445	Right-handed 310
Helix 19	19	A	449	456	Right-handed 310
Helix 20	20	B	6	19	Right-handed alpha
Helix 21	21	B	48	53	Right-handed alpha
Helix 22	22	B	54	58	Right-handed 310
Helix 23	23	B	107	109	Right-handed 310
Helix 24	24	B	129	143	Right-handed alpha
Helix 25	25	B	146	153	Right-handed alpha
Helix 26	26	B	221	229	Right-handed alpha
Helix 27	27	B	233	237	Right-handed 310
Helix 28	28	B	242	252	Right-handed alpha
Helix 29	29	B	253	259	Right-handed 310
Helix 30	30	B	270	275	Right-handed alpha
Helix 31	31	B	280	294	Right-handed alpha
Helix 32	32	B	296	313	Right-handed alpha
Helix 33	33	B	366	375	Right-handed alpha
Helix 34	34	B	392	402	Right-handed alpha
Helix 35	35	B	410	426	Right-handed alpha
Helix 36	36	B	429	441	Right-handed alpha
Helix 37	37	B	449	456	Right-handed 310
Helix 38	38	C	10	18	Right-handed alpha
Helix 39	39	C	48	53	Right-handed alpha
Helix 40	40	C	107	109	Right-handed 310
Helix 41	41	C	129	143	Right-handed alpha
Helix 42	42	C	146	153	Right-handed alpha
Helix 43	43	C	221	228	Right-handed alpha
Helix 44	44	C	233	237	Right-handed 310
Helix 45	45	C	242	252	Right-handed alpha
Helix 46	46	C	255	260	Right-handed alpha
Helix 47	47	C	270	275	Right-handed alpha
Helix 48	48	C	280	294	Right-handed alpha
Helix 49	49	C	296	315	Right-handed alpha
Helix 50	50	C	366	375	Right-handed alpha
Helix 51	51	C	392	402	Right-handed alpha
Helix 52	52	C	410	425	Right-handed alpha
Helix 53	53	C	429	440	Right-handed alpha
Helix 54	54	C	450	456	Right-handed 310
Helix 55	55	D	11	17	Right-handed alpha
Helix 56	56	D	47	53	Right-handed alpha
Helix 57	57	D	107	109	Right-handed 310
Helix 58	58	D	129	143	Right-handed alpha
Helix 59	59	D	146	153	Right-handed alpha
Helix 60	60	D	221	228	Right-handed alpha
Helix 61	61	D	233	237	Right-handed 310
Helix 62	62	D	242	252	Right-handed alpha
Helix 63	63	D	255	260	Right-handed alpha
Helix 64	64	D	270	275	Right-handed alpha
Helix 65	65	D	280	294	Right-handed alpha
Helix 66	66	D	296	315	Right-handed alpha
Helix 67	67	D	366	375	Right-handed alpha
Helix 68	68	D	392	402	Right-handed alpha
Helix 69	69	D	410	425	Right-handed alpha
Helix 70	70	D	430	439	Right-handed alpha
Helix 71	71	D	440	444	Right-handed 310
Helix 72	72	D	449	455	Right-handed 310

There are 28 sheets in PDB entry 4F0Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	218	220	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	45	47	anti-parallel
Strand 3	A	28	30	parallel
Strand 4	A	175	193	anti-parallel
Strand 5	A	156	161	anti-parallel
Strand 6	A	85	89	parallel
Strand 7	A	67	69	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	45	47	anti-parallel
Strand 3	A	28	30	parallel
Strand 4	A	175	193	anti-parallel
Strand 5	A	200	210	anti-parallel
Strand 6	A	111	115	anti-parallel
Strand 7	A	104	106	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	80	81	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	166	first strand
Strand 2	A	169	171	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	264	first strand
Strand 2	C	175	193	parallel
Strand 3	C	156	161	anti-parallel
Strand 4	C	85	89	parallel
Strand 5	C	67	69	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	45	47	anti-parallel
Strand 3	C	28	30	parallel
Strand 4	C	175	193	anti-parallel
Strand 5	C	200	210	anti-parallel
Strand 6	C	111	115	anti-parallel
Strand 7	C	104	106	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	324	first strand
Strand 2	A	335	342	anti-parallel
Strand 3	A	347	357	anti-parallel
Strand 4	A	381	387	parallel
Strand 5	A	406	409	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	390	391	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	218	220	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	45	47	anti-parallel
Strand 3	B	28	30	parallel
Strand 4	B	175	193	anti-parallel
Strand 5	B	156	161	anti-parallel
Strand 6	B	85	89	parallel
Strand 7	B	67	69	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	45	47	anti-parallel
Strand 3	B	28	30	parallel
Strand 4	B	175	193	anti-parallel
Strand 5	B	200	210	anti-parallel
Strand 6	B	111	115	anti-parallel
Strand 7	B	104	106	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	80	81	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	170	171	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	264	first strand
Strand 2	D	176	194	parallel
Strand 3	D	156	160	anti-parallel
Strand 4	D	85	89	parallel
Strand 5	D	67	69	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	29	first strand
Strand 2	D	176	194	anti-parallel
Strand 3	D	199	210	anti-parallel
Strand 4	D	111	115	anti-parallel
Strand 5	D	104	106	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	324	first strand
Strand 2	B	335	341	anti-parallel
Strand 3	B	348	357	anti-parallel
Strand 4	B	381	387	parallel
Strand 5	B	406	409	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	390	391	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	C	218	220	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	80	81	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	166	first strand
Strand 2	C	169	171	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	324	first strand
Strand 2	C	335	341	anti-parallel
Strand 3	C	348	357	anti-parallel
Strand 4	C	382	387	parallel
Strand 5	C	406	409	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	365	first strand
Strand 2	C	390	391	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	24	first strand
Strand 2	D	218	220	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	42	first strand
Strand 2	D	45	46	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	75	first strand
Strand 2	D	80	81	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	324	first strand
Strand 2	D	335	343	anti-parallel
Strand 3	D	346	357	anti-parallel
Strand 4	D	381	387	parallel
Strand 5	D	406	409	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	365	first strand
Strand 2	D	390	391	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4F0Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
4F0Q