Analysis of interatomic Contacts of Structural Units in PDB entry:
4F4W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F4W entry

There are 6 chains in PDB entry 4F4W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 342
P
 G 1 C 13
T
 C 4 C 18
B
 MET 1ILE 342
E
 G 1 C 13
F
 C 4 C 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 4F4W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 20Right-handed alpha
Helix 2
2
A
21 24Right-handed 310
Helix 3
3
A
47 52Right-handed alpha
Helix 4
4
A
60 68Right-handed alpha
Helix 5
5
A
77 94Right-handed alpha
Helix 6
6
A
118 138Right-handed alpha
Helix 7
7
A
148 160Right-handed alpha
Helix 8
8
A
168 170Right-handed 310
Helix 9
9
A
171 179Right-handed alpha
Helix 10
10
A
180 184Right-handed 310
Helix 11
11
A
188 198Right-handed alpha
Helix 12
12
A
202 209Right-handed 310
Helix 13
13
A
210 219Right-handed alpha
Helix 14
14
A
219 231Right-handed alpha
Helix 15
15
A
258 278Right-handed alpha
Helix 16
16
A
308 327Right-handed alpha
Helix 17
17
B
10 20Right-handed alpha
Helix 18
18
B
21 24Right-handed 310
Helix 19
19
B
47 52Right-handed alpha
Helix 20
20
B
60 68Right-handed alpha
Helix 21
21
B
77 94Right-handed alpha
Helix 22
22
B
112 116Right-handed 310
Helix 23
23
B
118 138Right-handed alpha
Helix 24
24
B
148 159Right-handed alpha
Helix 25
25
B
168 170Right-handed 310
Helix 26
26
B
171 179Right-handed alpha
Helix 27
27
B
180 184Right-handed 310
Helix 28
28
B
188 198Right-handed alpha
Helix 29
29
B
202 209Right-handed 310
Helix 30
30
B
210 219Right-handed alpha
Helix 31
31
B
219 231Right-handed alpha
Helix 32
32
B
258 278Right-handed alpha
Helix 33
33
B
308 327Right-handed alpha
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There are 6 sheets in PDB entry 4F4W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 103first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
3 8anti-parallel
Strand 4
A
141 146anti-parallel
Strand 5
A
164 166parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 46first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
72 75parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 256first strand
Strand 2
A
331 341anti-parallel
Strand 3
A
282 291anti-parallel
Strand 4
A
296 302anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 103first strand
Strand 2
B
106 110anti-parallel
Strand 3
B
3 8anti-parallel
Strand 4
B
141 146anti-parallel
Strand 5
B
164 166parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 46first strand
Strand 2
B
28 33anti-parallel
Strand 3
B
72 75parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 256first strand
Strand 2
B
331 341anti-parallel
Strand 3
B
282 291anti-parallel
Strand 4
B
296 302anti-parallel
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