Analysis of interatomic Contacts of Structural Units in PDB entry:
4F5A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F5A entry

There is 1 chain in PDB entry 4F5A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 144SER 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 4F5A. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
145 149Right-handed 310
Helix 2
2
A
157 166Right-handed alpha
Helix 3
3
A
225 236Right-handed alpha
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There are 2 sheets in PDB entry 4F5A. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
152 154first strand
Strand 2
A
174 179parallel
Strand 3
A
187 195anti-parallel
Strand 4
A
199 209anti-parallel
Strand 5
A
215 216anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
152 154first strand
Strand 2
A
174 179parallel
Strand 3
A
246 247parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il