Analysis of interatomic Contacts of Structural Units in PDB entry:
4F9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F9F entry

There are 6 chains in PDB entry 4F9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4ALA 477
B
 GLU 5ARG 478
C
 SER 4ALA 480
D
 SER 4ARG 478
E
 SER 4THR 479
F
 SER 4THR 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are129 helices in PDB entry 4F9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 41Right-handed alpha
Helix 2
2
A
56 66Right-handed alpha
Helix 3
3
A
75 77Right-handed 310
Helix 4
4
A
88 100Right-handed alpha
Helix 5
5
A
103 109Right-handed alpha
Helix 6
6
A
121 146Right-handed alpha
Helix 7
7
A
159 162Right-handed 310
Helix 8
8
A
163 170Right-handed alpha
Helix 9
9
A
187 192Right-handed alpha
Helix 10
10
A
195 207Right-handed alpha
Helix 11
11
A
216 231Right-handed alpha
Helix 12
12
A
260 264Right-handed 310
Helix 13
13
A
274 280Right-handed alpha
Helix 14
14
A
292 295Right-handed 310
Helix 15
15
A
296 310Right-handed alpha
Helix 16
16
A
329 351Right-handed alpha
Helix 17
17
A
362 373Right-handed alpha
Helix 18
18
A
387 396Right-handed alpha
Helix 19
19
A
410 415Right-handed alpha
Helix 20
20
A
416 418Right-handed 310
Helix 21
21
A
425 439Right-handed alpha
Helix 22
22
A
440 456Right-handed alpha
Helix 23
23
A
459 476Right-handed alpha
Helix 24
24
B
33 47Right-handed alpha
Helix 25
25
B
56 66Right-handed alpha
Helix 26
26
B
90 99Right-handed alpha
Helix 27
27
B
103 109Right-handed alpha
Helix 28
28
B
121 146Right-handed alpha
Helix 29
29
B
160 162Right-handed 310
Helix 30
30
B
163 172Right-handed alpha
Helix 31
31
B
187 192Right-handed alpha
Helix 32
32
B
195 207Right-handed alpha
Helix 33
33
B
216 231Right-handed alpha
Helix 34
34
B
274 279Right-handed alpha
Helix 35
35
B
292 295Right-handed 310
Helix 36
36
B
296 310Right-handed alpha
Helix 37
37
B
329 351Right-handed alpha
Helix 38
38
B
362 373Right-handed alpha
Helix 39
39
B
387 396Right-handed alpha
Helix 40
40
B
410 415Right-handed alpha
Helix 41
41
B
425 439Right-handed alpha
Helix 42
42
B
440 456Right-handed alpha
Helix 43
43
B
459 477Right-handed alpha
Helix 44
44
C
33 46Right-handed alpha
Helix 45
45
C
56 66Right-handed alpha
Helix 46
46
C
88 99Right-handed alpha
Helix 47
47
C
102 109Right-handed alpha
Helix 48
48
C
121 146Right-handed alpha
Helix 49
49
C
147 149Right-handed 310
Helix 50
50
C
163 170Right-handed alpha
Helix 51
51
C
187 192Right-handed alpha
Helix 52
52
C
195 207Right-handed alpha
Helix 53
53
C
216 231Right-handed alpha
Helix 54
54
C
274 280Right-handed alpha
Helix 55
55
C
292 295Right-handed 310
Helix 56
56
C
296 310Right-handed alpha
Helix 57
57
C
329 351Right-handed alpha
Helix 58
58
C
362 373Right-handed alpha
Helix 59
59
C
387 396Right-handed alpha
Helix 60
60
C
410 415Right-handed alpha
Helix 61
61
C
416 418Right-handed 310
Helix 62
62
C
425 439Right-handed alpha
Helix 63
63
C
440 456Right-handed alpha
Helix 64
64
C
459 477Right-handed alpha
Helix 65
65
D
34 41Right-handed alpha
Helix 66
66
D
56 66Right-handed alpha
Helix 67
67
D
75 77Right-handed 310
Helix 68
68
D
88 100Right-handed alpha
Helix 69
69
D
103 109Right-handed alpha
Helix 70
70
D
121 145Right-handed alpha
Helix 71
71
D
159 162Right-handed 310
Helix 72
72
D
163 172Right-handed alpha
Helix 73
73
D
187 192Right-handed alpha
Helix 74
74
D
195 207Right-handed alpha
Helix 75
75
D
216 231Right-handed alpha
Helix 76
76
D
260 264Right-handed 310
Helix 77
77
D
274 280Right-handed alpha
Helix 78
78
D
292 295Right-handed 310
Helix 79
79
D
296 310Right-handed alpha
Helix 80
80
D
329 351Right-handed alpha
Helix 81
81
D
362 373Right-handed alpha
Helix 82
82
D
387 396Right-handed alpha
Helix 83
83
D
410 415Right-handed alpha
Helix 84
84
D
416 418Right-handed 310
Helix 85
85
D
425 439Right-handed alpha
Helix 86
86
D
440 456Right-handed alpha
Helix 87
87
D
459 476Right-handed alpha
Helix 88
88
E
33 47Right-handed alpha
Helix 89
89
E
56 66Right-handed alpha
Helix 90
90
E
88 100Right-handed alpha
Helix 91
91
E
104 109Right-handed alpha
Helix 92
92
E
121 146Right-handed alpha
Helix 93
93
E
159 162Right-handed 310
Helix 94
94
E
163 172Right-handed alpha
Helix 95
95
E
187 192Right-handed alpha
Helix 96
96
E
195 207Right-handed alpha
Helix 97
97
E
216 231Right-handed alpha
Helix 98
98
E
260 266Right-handed alpha
Helix 99
99
E
274 279Right-handed alpha
Helix 100
100
E
292 295Right-handed 310
Helix 101
101
E
296 310Right-handed alpha
Helix 102
102
E
329 351Right-handed alpha
Helix 103
103
E
362 373Right-handed alpha
Helix 104
104
E
387 396Right-handed alpha
Helix 105
105
E
410 415Right-handed alpha
Helix 106
106
E
425 439Right-handed alpha
Helix 107
107
E
440 456Right-handed alpha
Helix 108
108
E
459 476Right-handed alpha
Helix 109
109
F
33 46Right-handed alpha
Helix 110
110
F
56 66Right-handed alpha
Helix 111
111
F
88 98Right-handed alpha
Helix 112
112
F
102 109Right-handed alpha
Helix 113
113
F
121 146Right-handed alpha
Helix 114
114
F
147 149Right-handed 310
Helix 115
115
F
159 162Right-handed 310
Helix 116
116
F
163 170Right-handed alpha
Helix 117
117
F
187 192Right-handed alpha
Helix 118
118
F
195 207Right-handed alpha
Helix 119
119
F
216 231Right-handed alpha
Helix 120
120
F
274 280Right-handed alpha
Helix 121
121
F
292 295Right-handed 310
Helix 122
122
F
296 310Right-handed alpha
Helix 123
123
F
329 351Right-handed alpha
Helix 124
124
F
362 373Right-handed alpha
Helix 125
125
F
387 396Right-handed alpha
Helix 126
126
F
410 415Right-handed alpha
Helix 127
127
F
425 439Right-handed alpha
Helix 128
128
F
440 456Right-handed alpha
Helix 129
129
F
459 477Right-handed alpha
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There are 19 sheets in PDB entry 4F9F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
79 85anti-parallel
Strand 3
A
47 53parallel
Strand 4
A
5 9parallel
Strand 5
A
152 157parallel
Strand 6
A
177 180parallel
Strand 7
A
211 214parallel
Strand 8
A
248 254parallel
Strand 9
A
242 245anti-parallel
Strand 10
A
235 237anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
25 29anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 358first strand
Strand 2
A
316 323parallel
Strand 3
A
283 290parallel
Strand 4
A
375 378parallel
Strand 5
A
401 405parallel
Strand 6
A
419 421parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
153 157parallel
Strand 3
B
177 180parallel
Strand 4
B
211 214parallel
Strand 5
B
248 254parallel
Strand 6
B
242 245anti-parallel
Strand 7
B
235 237anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
27 30anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
79 85parallel
Strand 3
B
70 73anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 359first strand
Strand 2
B
316 323parallel
Strand 3
B
283 290parallel
Strand 4
B
375 378parallel
Strand 5
B
401 405parallel
Strand 6
B
419 421parallel
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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 72first strand
Strand 2
C
80 85anti-parallel
Strand 3
C
50 53parallel
Strand 4
C
5 12parallel
Strand 5
C
152 157parallel
Strand 6
C
177 180parallel
Strand 7
C
211 214parallel
Strand 8
C
248 254parallel
Strand 9
C
242 245anti-parallel
Strand 10
C
235 237anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 16first strand
Strand 2
C
29 30anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
355 359first strand
Strand 2
C
316 323parallel
Strand 3
C
283 290parallel
Strand 4
C
375 378parallel
Strand 5
C
401 405parallel
Strand 6
C
419 421parallel
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There are 10 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
70 73first strand
Strand 2
D
79 85anti-parallel
Strand 3
D
47 53parallel
Strand 4
D
5 9parallel
Strand 5
D
152 157parallel
Strand 6
D
177 180parallel
Strand 7
D
211 214parallel
Strand 8
D
248 254parallel
Strand 9
D
242 245anti-parallel
Strand 10
D
235 237anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 17first strand
Strand 2
D
28 30anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
355 358first strand
Strand 2
D
316 323parallel
Strand 3
D
283 290parallel
Strand 4
D
375 378parallel
Strand 5
D
401 405parallel
Strand 6
D
419 421parallel
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There are 10 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
70 71first strand
Strand 2
E
81 85anti-parallel
Strand 3
E
50 53parallel
Strand 4
E
5 12parallel
Strand 5
E
152 157parallel
Strand 6
E
177 181parallel
Strand 7
E
211 214parallel
Strand 8
E
248 254parallel
Strand 9
E
242 245anti-parallel
Strand 10
E
235 237anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
15 17first strand
Strand 2
E
28 30anti-parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
355 359first strand
Strand 2
E
316 323parallel
Strand 3
E
283 290parallel
Strand 4
E
375 378parallel
Strand 5
E
401 405parallel
Strand 6
E
419 421parallel
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There are 10 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
70 72first strand
Strand 2
F
80 85anti-parallel
Strand 3
F
49 53parallel
Strand 4
F
5 9parallel
Strand 5
F
152 157parallel
Strand 6
F
177 180parallel
Strand 7
F
211 214parallel
Strand 8
F
248 254parallel
Strand 9
F
242 245anti-parallel
Strand 10
F
235 237anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
15 17first strand
Strand 2
F
28 30anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
355 359first strand
Strand 2
F
316 323parallel
Strand 3
F
283 290parallel
Strand 4
F
375 378parallel
Strand 5
F
401 405parallel
Strand 6
F
419 421parallel
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