Analysis of interatomic Contacts of Structural Units in PDB entry:
4FDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FDO entry

There is 1 chain in PDB entry 4FDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7LEU 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4FDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 45Right-handed alpha
Helix 2
2
A
97 106Right-handed alpha
Helix 3
3
A
122 129Right-handed alpha
Helix 4
4
A
135 140Right-handed alpha
Helix 5
5
A
141 144Right-handed 310
Helix 6
6
A
167 175Right-handed alpha
Helix 7
7
A
208 216Right-handed alpha
Helix 8
8
A
219 224Right-handed 310
Helix 9
9
A
252 256Right-handed 310
Helix 10
10
A
257 262Right-handed 310
Helix 11
11
A
310 315Right-handed alpha
Helix 12
12
A
322 328Right-handed alpha
Helix 13
13
A
343 357Right-handed alpha
Helix 14
14
A
395 410Right-handed alpha
Helix 15
15
A
416 419Right-handed 310
Helix 16
16
A
423 431Right-handed alpha
Helix 17
17
A
433 445Right-handed alpha
Helix 18
18
A
452 458Right-handed alpha
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There are 4 sheets in PDB entry 4FDO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
22 27anti-parallel
Strand 3
A
70 73parallel
Strand 4
A
51 54parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
89 93anti-parallel
Strand 3
A
183 190anti-parallel
Strand 4
A
146 152anti-parallel
Strand 5
A
158 161anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
192 193anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 309first strand
Strand 2
A
198 205anti-parallel
Strand 3
A
243 250anti-parallel
Strand 4
A
226 231anti-parallel
Strand 5
A
365 369anti-parallel
Strand 6
A
383 391anti-parallel
Strand 7
A
332 340anti-parallel
Strand 8
A
413 414anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il