Analysis of interatomic Contacts of Structural Units in PDB entry:
4FJ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4FJ6 entry

There are 3 chains in PDB entry 4FJ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 22	HIS 540
B	ASP 21	HIS 540
C	ASP 21	ARG 248

There are 36 helices in PDB entry 4FJ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	66	68	Right-handed 310
Helix 2	2	A	192	196	Right-handed 310
Helix 3	3	A	255	259	Right-handed 310
Helix 4	4	A	260	264	Right-handed 310
Helix 5	5	A	294	298	Right-handed 310
Helix 6	6	A	329	334	Right-handed alpha
Helix 7	7	A	453	457	Right-handed 310
Helix 8	8	A	491	493	Right-handed 310
Helix 9	9	A	535	539	Right-handed alpha
Helix 10	10	B	66	68	Right-handed 310
Helix 11	11	B	192	196	Right-handed 310
Helix 12	12	B	255	259	Right-handed 310
Helix 13	13	B	260	264	Right-handed 310
Helix 14	14	B	294	298	Right-handed 310
Helix 15	15	B	329	334	Right-handed alpha
Helix 16	16	B	453	457	Right-handed 310
Helix 17	17	B	491	493	Right-handed 310
Helix 18	18	B	535	539	Right-handed alpha
Helix 19	19	C	66	68	Right-handed 310
Helix 20	20	C	192	196	Right-handed 310
Helix 21	21	C	255	259	Right-handed 310
Helix 22	22	C	260	264	Right-handed 310
Helix 23	23	C	294	299	Right-handed alpha
Helix 24	24	C	329	334	Right-handed alpha
Helix 25	25	C	453	457	Right-handed 310
Helix 26	26	C	491	493	Right-handed 310
Helix 27	27	C	535	539	Right-handed alpha
Helix 28	28	D	66	68	Right-handed 310
Helix 29	29	D	192	196	Right-handed 310
Helix 30	30	D	255	259	Right-handed 310
Helix 31	31	D	260	264	Right-handed 310
Helix 32	32	D	294	299	Right-handed alpha
Helix 33	33	D	329	334	Right-handed alpha
Helix 34	34	D	453	457	Right-handed 310
Helix 35	35	D	491	493	Right-handed 310
Helix 36	36	D	535	539	Right-handed alpha

There are 42 sheets in PDB entry 4FJ6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	119	first strand
Strand 2	A	70	80	anti-parallel
Strand 3	A	137	147	anti-parallel
Strand 4	A	40	48	anti-parallel
Strand 5	A	23	26	anti-parallel
Strand 6	A	173	175	parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	182	189	parallel
Strand 3	A	156	157	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	182	189	parallel
Strand 3	A	528	534	anti-parallel
Strand 4	A	516	521	anti-parallel
Strand 5	A	507	511	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	128	first strand
Strand 2	A	56	61	anti-parallel
Strand 3	A	159	166	anti-parallel
Strand 4	A	169	170	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	206	first strand
Strand 2	A	212	219	anti-parallel
Strand 3	A	230	237	anti-parallel
Strand 4	A	248	251	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	328	first strand
Strand 2	A	310	316	anti-parallel
Strand 3	A	280	286	anti-parallel
Strand 4	A	266	273	anti-parallel
Strand 5	A	346	347	parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	343	first strand
Strand 2	A	356	363	anti-parallel
Strand 3	A	369	376	anti-parallel
Strand 4	A	384	385	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	A	356	363	anti-parallel
Strand 3	A	369	376	anti-parallel
Strand 4	A	390	391	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	402	first strand
Strand 2	A	405	412	anti-parallel
Strand 3	A	419	423	anti-parallel
Strand 4	A	431	432	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	452	first strand
Strand 2	A	463	469	anti-parallel
Strand 3	A	478	483	anti-parallel
Strand 4	A	495	499	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	119	first strand
Strand 2	B	70	80	anti-parallel
Strand 3	B	137	147	anti-parallel
Strand 4	B	40	48	anti-parallel
Strand 5	B	23	26	anti-parallel
Strand 6	B	173	175	parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	182	189	parallel
Strand 3	B	156	157	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	182	189	parallel
Strand 3	B	528	534	anti-parallel
Strand 4	B	516	521	anti-parallel
Strand 5	B	507	511	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	56	61	anti-parallel
Strand 3	B	159	166	anti-parallel
Strand 4	B	169	170	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	206	first strand
Strand 2	B	212	219	anti-parallel
Strand 3	B	230	237	anti-parallel
Strand 4	B	248	251	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	B	310	316	anti-parallel
Strand 3	B	280	286	anti-parallel
Strand 4	B	266	273	anti-parallel
Strand 5	B	346	347	parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	343	first strand
Strand 2	B	356	363	anti-parallel
Strand 3	B	369	376	anti-parallel
Strand 4	B	384	385	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	350	first strand
Strand 2	B	356	363	anti-parallel
Strand 3	B	369	376	anti-parallel
Strand 4	B	390	391	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	402	first strand
Strand 2	B	405	412	anti-parallel
Strand 3	B	419	423	anti-parallel
Strand 4	B	431	432	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	417	first strand
Strand 2	B	441	442	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	452	first strand
Strand 2	B	463	469	anti-parallel
Strand 3	B	478	483	anti-parallel
Strand 4	B	495	499	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	119	first strand
Strand 2	C	70	80	anti-parallel
Strand 3	C	137	147	anti-parallel
Strand 4	C	40	48	anti-parallel
Strand 5	C	24	26	anti-parallel
Strand 6	C	174	175	parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	182	189	parallel
Strand 3	C	156	157	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	182	189	parallel
Strand 3	C	528	534	anti-parallel
Strand 4	C	516	521	anti-parallel
Strand 5	C	507	511	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	56	61	anti-parallel
Strand 3	C	159	166	anti-parallel
Strand 4	C	169	170	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	206	first strand
Strand 2	C	212	219	anti-parallel
Strand 3	C	230	237	anti-parallel
Strand 4	C	248	251	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	328	first strand
Strand 2	C	310	316	anti-parallel
Strand 3	C	280	286	anti-parallel
Strand 4	C	266	273	anti-parallel
Strand 5	C	346	347	parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	343	first strand
Strand 2	C	356	363	anti-parallel
Strand 3	C	369	376	anti-parallel
Strand 4	C	384	385	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	350	first strand
Strand 2	C	356	363	anti-parallel
Strand 3	C	369	376	anti-parallel
Strand 4	C	390	391	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	402	first strand
Strand 2	C	405	412	anti-parallel
Strand 3	C	419	423	anti-parallel
Strand 4	C	431	432	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	452	first strand
Strand 2	C	463	469	anti-parallel
Strand 3	C	478	483	anti-parallel
Strand 4	C	495	499	anti-parallel

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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	119	first strand
Strand 2	D	70	80	anti-parallel
Strand 3	D	137	147	anti-parallel
Strand 4	D	40	48	anti-parallel
Strand 5	D	23	26	anti-parallel
Strand 6	D	173	175	parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	182	189	parallel
Strand 3	D	156	157	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	182	189	parallel
Strand 3	D	528	534	anti-parallel
Strand 4	D	516	521	anti-parallel
Strand 5	D	507	513	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	129	first strand
Strand 2	D	56	61	anti-parallel
Strand 3	D	159	166	anti-parallel
Strand 4	D	169	170	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	206	first strand
Strand 2	D	212	219	anti-parallel
Strand 3	D	230	237	anti-parallel
Strand 4	D	248	251	anti-parallel

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There are 5 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	328	first strand
Strand 2	D	310	316	anti-parallel
Strand 3	D	280	286	anti-parallel
Strand 4	D	266	273	anti-parallel
Strand 5	D	346	347	parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	343	first strand
Strand 2	D	356	363	anti-parallel
Strand 3	D	369	376	anti-parallel
Strand 4	D	384	385	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	350	first strand
Strand 2	D	356	363	anti-parallel
Strand 3	D	369	376	anti-parallel
Strand 4	D	390	391	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	402	first strand
Strand 2	D	405	412	anti-parallel
Strand 3	D	419	423	anti-parallel
Strand 4	D	431	432	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	416	417	first strand
Strand 2	D	441	442	anti-parallel

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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	448	452	first strand
Strand 2	D	463	469	anti-parallel
Strand 3	D	478	483	anti-parallel
Strand 4	D	495	499	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4FJ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
4FJ6