Analysis of interatomic Contacts of Structural Units in PDB entry:
4FMF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4FMF entry

There are 4 chains in PDB entry 4FMF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 36	PRO 337
B	ASN 36	THR 334
C	ASN 36	PHE 336
D	ASN 36	PRO 337

There are 8 helices in PDB entry 4FMF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	115	119	Right-handed 310
Helix 2	2	A	216	220	Right-handed 310
Helix 3	3	B	115	119	Right-handed 310
Helix 4	4	B	216	220	Right-handed 310
Helix 5	5	C	115	119	Right-handed 310
Helix 6	6	C	216	220	Right-handed 310
Helix 7	7	D	115	119	Right-handed 310
Helix 8	8	D	216	220	Right-handed 310

There are 24 sheets in PDB entry 4FMF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	42	first strand
Strand 2	A	132	143	parallel
Strand 3	A	120	129	anti-parallel
Strand 4	A	61	70	anti-parallel
Strand 5	A	76	82	anti-parallel
Strand 6	A	86	89	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	109	111	anti-parallel
Strand 3	A	97	99	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	152	first strand
Strand 2	A	167	177	anti-parallel
Strand 3	A	205	213	anti-parallel
Strand 4	A	192	199	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	A	243	252	parallel
Strand 3	A	265	274	anti-parallel
Strand 4	A	299	302	anti-parallel
Strand 5	A	293	296	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	186	first strand
Strand 2	A	225	230	anti-parallel
Strand 3	A	233	237	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	284	first strand
Strand 2	A	312	320	anti-parallel
Strand 3	A	323	331	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	42	first strand
Strand 2	B	132	143	parallel
Strand 3	B	120	129	anti-parallel
Strand 4	B	61	71	anti-parallel
Strand 5	B	74	82	anti-parallel
Strand 6	B	86	89	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	49	first strand
Strand 2	B	109	111	anti-parallel
Strand 3	B	97	99	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	152	first strand
Strand 2	B	167	177	anti-parallel
Strand 3	B	205	213	anti-parallel
Strand 4	B	192	199	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	243	252	parallel
Strand 3	B	265	274	anti-parallel
Strand 4	B	299	302	anti-parallel
Strand 5	B	293	296	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	187	first strand
Strand 2	B	223	230	anti-parallel
Strand 3	B	233	240	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	284	first strand
Strand 2	B	312	320	anti-parallel
Strand 3	B	323	331	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	42	first strand
Strand 2	C	132	143	parallel
Strand 3	C	120	129	anti-parallel
Strand 4	C	61	70	anti-parallel
Strand 5	C	75	82	anti-parallel
Strand 6	C	86	89	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	49	first strand
Strand 2	C	109	111	anti-parallel
Strand 3	C	97	99	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	152	first strand
Strand 2	C	167	177	anti-parallel
Strand 3	C	205	213	anti-parallel
Strand 4	C	192	199	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	243	252	parallel
Strand 3	C	265	274	anti-parallel
Strand 4	C	299	302	anti-parallel
Strand 5	C	293	296	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	187	first strand
Strand 2	C	223	230	anti-parallel
Strand 3	C	233	240	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	284	first strand
Strand 2	C	312	320	anti-parallel
Strand 3	C	323	331	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	42	first strand
Strand 2	D	132	143	parallel
Strand 3	D	120	129	anti-parallel
Strand 4	D	61	70	anti-parallel
Strand 5	D	76	82	anti-parallel
Strand 6	D	86	89	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	49	first strand
Strand 2	D	109	111	anti-parallel
Strand 3	D	97	99	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	152	first strand
Strand 2	D	167	177	anti-parallel
Strand 3	D	205	213	anti-parallel
Strand 4	D	192	199	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	243	252	parallel
Strand 3	D	265	274	anti-parallel
Strand 4	D	299	302	anti-parallel
Strand 5	D	293	296	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	187	first strand
Strand 2	D	223	230	anti-parallel
Strand 3	D	233	240	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	284	first strand
Strand 2	D	312	320	anti-parallel
Strand 3	D	323	331	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4FMF

Analysis of interatomic Contacts of Structural Units in PDB entry:
4FMF