Analysis of interatomic Contacts of Structural Units in PDB entry:
4G5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4G5P entry

There are 2 chains in PDB entry 4G5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 696TYR 1016
B
 GLU 697ILE 1018
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4G5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
752 769Right-handed alpha
Helix 2
2
A
798 806Right-handed alpha
Helix 3
3
A
810 831Right-handed alpha
Helix 4
4
A
839 841Right-handed 310
Helix 5
5
A
882 888Right-handed alpha
Helix 6
6
A
892 910Right-handed alpha
Helix 7
7
A
919 921Right-handed 310
Helix 8
8
A
922 930Right-handed alpha
Helix 9
9
A
940 950Right-handed alpha
Helix 10
10
A
960 974Right-handed alpha
Helix 11
11
A
975 978Right-handed 310
Helix 12
12
B
708 710Right-handed 310
Helix 13
13
B
752 769Right-handed alpha
Helix 14
14
B
797 805Right-handed alpha
Helix 15
15
B
806 809Right-handed 310
Helix 16
16
B
810 831Right-handed alpha
Helix 17
17
B
839 841Right-handed 310
Helix 18
18
B
877 882Right-handed 310
Helix 19
19
B
883 888Right-handed alpha
Helix 20
20
B
892 909Right-handed alpha
Helix 21
21
B
919 930Right-handed alpha
Helix 22
22
B
940 951Right-handed alpha
Helix 23
23
B
960 974Right-handed alpha
Helix 24
24
B
974 979Right-handed alpha
Helix 25
25
B
995 1003Right-handed alpha
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There are 8 sheets in PDB entry 4G5P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 713first strand
Strand 2
A
730 731anti-parallel
Strand 3
A
740 747anti-parallel
Strand 4
A
724 727anti-parallel
Strand 5
A
717 720anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 713first strand
Strand 2
A
730 731anti-parallel
Strand 3
A
740 747anti-parallel
Strand 4
A
787 791anti-parallel
Strand 5
A
777 781anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
796 797first strand
Strand 2
A
843 847anti-parallel
Strand 3
A
850 853anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
833 834first strand
Strand 2
A
860 861anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
869 870first strand
Strand 2
A
890 891anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
712 720first strand
Strand 2
B
725 731anti-parallel
Strand 3
B
740 746anti-parallel
Strand 4
B
787 791anti-parallel
Strand 5
B
777 781anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
843 847first strand
Strand 2
B
850 853anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
869 870first strand
Strand 2
B
890 891anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il