Analysis of interatomic Contacts of Structural Units in PDB entry:
4G84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4G84 entry

There are 2 chains in PDB entry 4G84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 55GLN 504
B
 GLY 43GLN 504
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4G84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
66 87Right-handed alpha
Helix 2
2
A
100 104Right-handed alpha
Helix 3
3
A
131 142Right-handed alpha
Helix 4
4
A
185 203Right-handed alpha
Helix 5
5
A
214 225Right-handed alpha
Helix 6
6
A
227 239Right-handed alpha
Helix 7
7
A
240 243Right-handed 310
Helix 8
8
A
245 256Right-handed alpha
Helix 9
9
A
260 272Right-handed alpha
Helix 10
10
A
276 284Right-handed alpha
Helix 11
11
A
286 291Right-handed alpha
Helix 12
12
A
292 312Right-handed alpha
Helix 13
13
A
314 316Right-handed 310
Helix 14
14
A
366 370Right-handed 310
Helix 15
15
A
385 399Right-handed alpha
Helix 16
16
A
420 434Right-handed alpha
Helix 17
17
A
447 459Right-handed alpha
Helix 18
18
A
467 474Right-handed alpha
Helix 19
19
A
493 503Right-handed alpha
Helix 20
20
B
46 56Right-handed alpha
Helix 21
21
B
66 87Right-handed alpha
Helix 22
22
B
100 104Right-handed alpha
Helix 23
23
B
131 142Right-handed alpha
Helix 24
24
B
185 202Right-handed alpha
Helix 25
25
B
214 224Right-handed alpha
Helix 26
26
B
227 229Right-handed 310
Helix 27
27
B
230 239Right-handed alpha
Helix 28
28
B
240 243Right-handed 310
Helix 29
29
B
245 255Right-handed alpha
Helix 30
30
B
260 272Right-handed alpha
Helix 31
31
B
276 285Right-handed alpha
Helix 32
32
B
288 291Right-handed 310
Helix 33
33
B
292 312Right-handed alpha
Helix 34
34
B
314 316Right-handed 310
Helix 35
35
B
365 371Right-handed alpha
Helix 36
36
B
385 400Right-handed alpha
Helix 37
37
B
420 434Right-handed alpha
Helix 38
38
B
447 459Right-handed alpha
Helix 39
39
B
467 473Right-handed alpha
Helix 40
40
B
493 503Right-handed alpha
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There are 6 sheets in PDB entry 4G84. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
147 156parallel
Strand 3
A
170 179anti-parallel
Strand 4
A
379 384anti-parallel
Strand 5
A
352 362anti-parallel
Strand 6
A
334 342anti-parallel
Strand 7
A
207 213anti-parallel
Strand 8
A
318 321parallel
Strand 9
A
274 275anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
125 127anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 439first strand
Strand 2
A
411 414parallel
Strand 3
A
462 465parallel
Strand 4
A
475 480anti-parallel
Strand 5
A
486 490anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 91first strand
Strand 2
B
147 156parallel
Strand 3
B
170 179anti-parallel
Strand 4
B
379 384anti-parallel
Strand 5
B
356 362anti-parallel
Strand 6
B
334 340anti-parallel
Strand 7
B
207 213anti-parallel
Strand 8
B
318 321parallel
Strand 9
B
274 275anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 99first strand
Strand 2
B
125 127anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
438 439first strand
Strand 2
B
411 414parallel
Strand 3
B
462 465parallel
Strand 4
B
475 480anti-parallel
Strand 5
B
486 490anti-parallel
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