Analysis of interatomic Contacts of Structural Units in PDB entry:
4G8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4G8A entry

There are 3 chains in PDB entry 4G8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 27CYS 627
B
 PRO 23CYS 627
C
 GLN 19PHE 64
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4G8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
119 123Right-handed 310
Helix 2
2
A
168 174Right-handed 310
Helix 3
3
A
191 194Right-handed 310
Helix 4
4
A
195 200Right-handed alpha
Helix 5
5
A
239 249Right-handed alpha
Helix 6
6
A
277 283Right-handed 310
Helix 7
7
A
304 308Right-handed 310
Helix 8
8
A
323 328Right-handed 310
Helix 9
9
A
392 397Right-handed alpha
Helix 10
10
A
537 541Right-handed 310
Helix 11
11
A
584 586Right-handed 310
Helix 12
12
A
587 597Right-handed alpha
Helix 13
13
A
603 607Right-handed 310
Helix 14
14
A
619 623Right-handed 310
Helix 15
15
B
168 173Right-handed 310
Helix 16
16
B
191 201Right-handed 310
Helix 17
17
B
239 249Right-handed alpha
Helix 18
18
B
277 283Right-handed 310
Helix 19
19
B
304 308Right-handed 310
Helix 20
20
B
323 328Right-handed 310
Helix 21
21
B
392 397Right-handed alpha
Helix 22
22
B
537 541Right-handed 310
Helix 23
23
B
561 565Right-handed 310
Helix 24
24
B
584 586Right-handed 310
Helix 25
25
B
587 597Right-handed alpha
Helix 26
26
B
603 607Right-handed 310
Helix 27
27
C
102 107Right-handed 310
Helix 28
28
D
102 107Right-handed 310
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There are 21 sheets in PDB entry 4G8A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 24 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
37 39anti-parallel
Strand 3
A
58 60parallel
Strand 4
A
82 84parallel
Strand 5
A
106 108parallel
Strand 6
A
130 132parallel
Strand 7
A
154 156parallel
Strand 8
A
179 181parallel
Strand 9
A
207 209parallel
Strand 10
A
227 234parallel
Strand 11
A
254 261parallel
Strand 12
A
284 291parallel
Strand 13
A
312 316parallel
Strand 14
A
334 338parallel
Strand 15
A
355 359parallel
Strand 16
A
377 379parallel
Strand 17
A
403 405parallel
Strand 18
A
426 428parallel
Strand 19
A
451 453parallel
Strand 20
A
475 477parallel
Strand 21
A
500 502parallel
Strand 22
A
524 526parallel
Strand 23
A
548 550parallel
Strand 24
A
573 575parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
92 93parallel
Strand 3
A
116 117parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
217 218parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 299first strand
Strand 2
A
319 322parallel
Strand 3
A
341 342parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 390first strand
Strand 2
A
411 414parallel
Strand 3
A
433 435parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 461first strand
Strand 2
A
482 483parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 488first strand
Strand 2
A
510 511parallel
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There are 24 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
37 39anti-parallel
Strand 3
B
58 60parallel
Strand 4
B
82 84parallel
Strand 5
B
106 108parallel
Strand 6
B
130 132parallel
Strand 7
B
154 156parallel
Strand 8
B
179 181parallel
Strand 9
B
207 209parallel
Strand 10
B
227 234parallel
Strand 11
B
254 261parallel
Strand 12
B
284 291parallel
Strand 13
B
312 316parallel
Strand 14
B
334 338parallel
Strand 15
B
355 359parallel
Strand 16
B
377 379parallel
Strand 17
B
403 405parallel
Strand 18
B
426 428parallel
Strand 19
B
451 453parallel
Strand 20
B
475 477parallel
Strand 21
B
500 502parallel
Strand 22
B
524 526parallel
Strand 23
B
548 550parallel
Strand 24
B
573 575parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 69first strand
Strand 2
B
92 93parallel
Strand 3
B
116 117parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 190first strand
Strand 2
B
217 218parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 299first strand
Strand 2
B
319 322parallel
Strand 3
B
341 342parallel
Strand 4
B
362 363parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 390first strand
Strand 2
B
411 414parallel
Strand 3
B
433 435parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
460 461first strand
Strand 2
B
482 483parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
487 488first strand
Strand 2
B
510 511parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
581 582first strand
Strand 2
B
609 611parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 26first strand
Strand 2
C
30 36anti-parallel
Strand 3
C
144 155anti-parallel
Strand 4
C
129 139anti-parallel
Strand 5
C
75 82anti-parallel
Strand 6
C
85 86anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 26first strand
Strand 2
C
30 36anti-parallel
Strand 3
C
144 155anti-parallel
Strand 4
C
129 139anti-parallel
Strand 5
C
75 82anti-parallel
Strand 6
C
90 93anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 49first strand
Strand 2
C
56 65anti-parallel
Strand 3
C
113 122anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 26first strand
Strand 2
D
30 36anti-parallel
Strand 3
D
144 155anti-parallel
Strand 4
D
129 139anti-parallel
Strand 5
D
75 82anti-parallel
Strand 6
D
85 86anti-parallel
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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 26first strand
Strand 2
D
30 36anti-parallel
Strand 3
D
144 155anti-parallel
Strand 4
D
129 139anti-parallel
Strand 5
D
75 82anti-parallel
Strand 6
D
90 93anti-parallel
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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 49first strand
Strand 2
D
56 65anti-parallel
Strand 3
D
113 122anti-parallel
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