Analysis of interatomic Contacts of Structural Units in PDB entry:
4GBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GBE entry

There are 3 chains in PDB entry 4GBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 LYS 3PRO 270
E
 LYS 3PRO 270
F
 LYS 3PRO 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4GBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
17 25Right-handed alpha
Helix 2
2
D
39 44Right-handed alpha
Helix 3
3
D
56 69Right-handed alpha
Helix 4
4
D
69 79Right-handed alpha
Helix 5
5
D
80 86Right-handed 310
Helix 6
6
D
87 101Right-handed alpha
Helix 7
7
D
103 118Right-handed alpha
Helix 8
8
D
119 122Right-handed 310
Helix 9
9
D
144 156Right-handed alpha
Helix 10
10
D
164 170Right-handed alpha
Helix 11
11
D
202 219Right-handed alpha
Helix 12
12
D
230 237Right-handed alpha
Helix 13
13
E
14 16Right-handed 310
Helix 14
14
E
17 25Right-handed alpha
Helix 15
15
E
39 44Right-handed alpha
Helix 16
16
E
56 69Right-handed alpha
Helix 17
17
E
69 79Right-handed alpha
Helix 18
18
E
80 81Right-handed 310
Helix 19
19
E
82 86Right-handed 310
Helix 20
20
E
87 101Right-handed alpha
Helix 21
21
E
103 118Right-handed alpha
Helix 22
22
E
119 122Right-handed 310
Helix 23
23
E
144 156Right-handed alpha
Helix 24
24
E
164 170Right-handed alpha
Helix 25
25
E
202 219Right-handed alpha
Helix 26
26
E
230 237Right-handed alpha
Helix 27
27
F
14 16Right-handed 310
Helix 28
28
F
17 25Right-handed alpha
Helix 29
29
F
41 45Right-handed 310
Helix 30
30
F
56 69Right-handed alpha
Helix 31
31
F
69 79Right-handed alpha
Helix 32
32
F
80 81Right-handed 310
Helix 33
33
F
82 86Right-handed 310
Helix 34
34
F
87 101Right-handed alpha
Helix 35
35
F
103 118Right-handed alpha
Helix 36
36
F
119 122Right-handed 310
Helix 37
37
F
144 156Right-handed alpha
Helix 38
38
F
164 171Right-handed alpha
Helix 39
39
F
202 219Right-handed alpha
Helix 40
40
F
230 237Right-handed alpha
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There are 3 sheets in PDB entry 4GBE. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
158 162first strand
Strand 2
D
49 54parallel
Strand 3
D
30 33parallel
Strand 4
D
176 180parallel
Strand 5
D
223 228parallel
Strand 6
D
263 268anti-parallel
Strand 7
D
241 245anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
158 162first strand
Strand 2
E
49 54parallel
Strand 3
E
30 33parallel
Strand 4
E
176 180parallel
Strand 5
E
223 228parallel
Strand 6
E
263 268anti-parallel
Strand 7
E
241 245anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
158 161first strand
Strand 2
F
49 53parallel
Strand 3
F
30 33parallel
Strand 4
F
176 180parallel
Strand 5
F
223 228parallel
Strand 6
F
263 268anti-parallel
Strand 7
F
241 245anti-parallel
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