Analysis of interatomic Contacts of Structural Units in PDB entry:
4GCV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GCV entry

There are 9 chains in PDB entry 4GCV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 11LEU 156
B
 CYS 11LEU 156
C
 CYS 11LEU 156
D
 CYS 11LEU 156
E
 CYS 11LEU 156
F
 CYS 11LEU 156
G
 CYS 11LEU 156
H
 CYS 11LEU 156
I
 CYS 11VAL 114
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 4GCV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 20Right-handed alpha
Helix 2
2
A
22 34Right-handed alpha
Helix 3
3
A
38 47Right-handed alpha
Helix 4
4
A
49 63Right-handed alpha
Helix 5
5
A
83 89Right-handed alpha
Helix 6
6
A
89 102Right-handed alpha
Helix 7
7
A
105 109Right-handed 310
Helix 8
8
A
149 156Right-handed alpha
Helix 9
9
B
12 20Right-handed alpha
Helix 10
10
B
22 34Right-handed alpha
Helix 11
11
B
38 47Right-handed alpha
Helix 12
12
B
49 63Right-handed alpha
Helix 13
13
B
83 102Right-handed alpha
Helix 14
14
B
149 156Right-handed alpha
Helix 15
15
C
12 20Right-handed alpha
Helix 16
16
C
22 34Right-handed alpha
Helix 17
17
C
38 47Right-handed alpha
Helix 18
18
C
49 63Right-handed alpha
Helix 19
19
C
83 89Right-handed alpha
Helix 20
20
C
89 102Right-handed alpha
Helix 21
21
C
105 109Right-handed 310
Helix 22
22
C
149 156Right-handed alpha
Helix 23
23
D
12 20Right-handed alpha
Helix 24
24
D
22 34Right-handed alpha
Helix 25
25
D
38 47Right-handed alpha
Helix 26
26
D
49 63Right-handed alpha
Helix 27
27
D
83 89Right-handed alpha
Helix 28
28
D
89 102Right-handed alpha
Helix 29
29
D
105 109Right-handed 310
Helix 30
30
D
136 138Right-handed 310
Helix 31
31
D
149 156Right-handed alpha
Helix 32
32
E
12 20Right-handed alpha
Helix 33
33
E
22 34Right-handed alpha
Helix 34
34
E
38 47Right-handed alpha
Helix 35
35
E
49 63Right-handed alpha
Helix 36
36
E
83 89Right-handed alpha
Helix 37
37
E
89 102Right-handed alpha
Helix 38
38
E
149 156Right-handed alpha
Helix 39
39
F
12 20Right-handed alpha
Helix 40
40
F
22 34Right-handed alpha
Helix 41
41
F
38 47Right-handed alpha
Helix 42
42
F
49 63Right-handed alpha
Helix 43
43
F
83 89Right-handed alpha
Helix 44
44
F
89 102Right-handed alpha
Helix 45
45
F
149 156Right-handed alpha
Helix 46
46
G
12 20Right-handed alpha
Helix 47
47
G
22 34Right-handed alpha
Helix 48
48
G
38 47Right-handed alpha
Helix 49
49
G
49 63Right-handed alpha
Helix 50
50
G
83 89Right-handed alpha
Helix 51
51
G
89 102Right-handed alpha
Helix 52
52
G
105 109Right-handed 310
Helix 53
53
G
136 138Right-handed 310
Helix 54
54
G
149 156Right-handed alpha
Helix 55
55
H
12 20Right-handed alpha
Helix 56
56
H
22 34Right-handed alpha
Helix 57
57
H
38 47Right-handed alpha
Helix 58
58
H
49 63Right-handed alpha
Helix 59
59
H
83 89Right-handed alpha
Helix 60
60
H
89 101Right-handed alpha
Helix 61
61
H
149 156Right-handed alpha
Helix 62
62
I
12 20Right-handed alpha
Helix 63
63
I
22 34Right-handed alpha
Helix 64
64
I
38 47Right-handed alpha
Helix 65
65
I
49 63Right-handed alpha
Helix 66
66
I
83 89Right-handed alpha
Helix 67
67
I
89 102Right-handed alpha
Helix 68
68
I
149 156Right-handed alpha
Helix 69
69
J
12 20Right-handed alpha
Helix 70
70
J
22 34Right-handed alpha
Helix 71
71
J
38 47Right-handed alpha
Helix 72
72
J
49 63Right-handed alpha
Helix 73
73
J
83 89Right-handed alpha
Helix 74
74
J
89 102Right-handed alpha
Helix 75
75
J
136 138Right-handed 310
Helix 76
76
J
149 156Right-handed alpha
Helix 77
77
K
12 20Right-handed alpha
Helix 78
78
K
22 34Right-handed alpha
Helix 79
79
K
38 47Right-handed alpha
Helix 80
80
K
49 63Right-handed alpha
Helix 81
81
K
83 102Right-handed alpha
Helix 82
82
K
105 109Right-handed 310
Helix 83
83
K
149 156Right-handed alpha
Helix 84
84
L
12 20Right-handed alpha
Helix 85
85
L
22 34Right-handed alpha
Helix 86
86
L
38 47Right-handed alpha
Helix 87
87
L
49 63Right-handed alpha
Helix 88
88
L
83 89Right-handed alpha
Helix 89
89
L
89 102Right-handed alpha
Helix 90
90
L
149 156Right-handed alpha
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There are 30 sheets in PDB entry 4GCV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
78 82anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
B
140 144anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
122 129anti-parallel
Strand 3
B
122 129anti-parallel
Strand 4
B
134 136anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 144first strand
Strand 2
B
111 115anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 72first strand
Strand 2
B
77 82anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 69first strand
Strand 2
C
79 82anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 115first strand
Strand 2
D
140 144anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 136first strand
Strand 2
C
122 129anti-parallel
Strand 3
D
122 129anti-parallel
Strand 4
D
134 135anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 144first strand
Strand 2
D
111 115anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 69first strand
Strand 2
D
79 82anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
66 69first strand
Strand 2
E
79 82anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
111 115first strand
Strand 2
F
140 144anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
134 136first strand
Strand 2
E
122 129anti-parallel
Strand 3
F
122 129anti-parallel
Strand 4
F
134 136anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
140 144first strand
Strand 2
F
111 115anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
66 70first strand
Strand 2
F
78 82anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
66 69first strand
Strand 2
G
79 82anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
111 115first strand
Strand 2
H
140 144anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
134 135first strand
Strand 2
G
122 129anti-parallel
Strand 3
H
122 129anti-parallel
Strand 4
H
134 136anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
140 144first strand
Strand 2
H
111 115anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
66 72first strand
Strand 2
H
77 82anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
66 69first strand
Strand 2
I
79 82anti-parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
111 115first strand
Strand 2
J
140 144anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
134 136first strand
Strand 2
I
122 129anti-parallel
Strand 3
J
122 129anti-parallel
Strand 4
J
134 135anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
140 144first strand
Strand 2
J
111 115anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
66 69first strand
Strand 2
J
79 82anti-parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
66 70first strand
Strand 2
K
78 82anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
111 115first strand
Strand 2
L
140 144anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
134 136first strand
Strand 2
K
122 129anti-parallel
Strand 3
L
122 129anti-parallel
Strand 4
L
134 136anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
140 144first strand
Strand 2
L
111 115anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
66 69first strand
Strand 2
L
79 82anti-parallel
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