Analysis of interatomic Contacts of Structural Units in PDB entry:
4GG6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GG6 entry

There are 8 chains in PDB entry 4GG6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 0	PRO 180
B	SER 3	TRP 188
C	ASP 0	PRO 180
D	ASP 2	ARG 189
E	LYS 3	PRO 217
F	SER 2	ALA 256
G	LYS 3	PHE 205
H	SER 2	THR 20

There are 22 helices in PDB entry 4GG6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	45	52	Right-handed alpha
Helix 2	2	A	55	77	Right-handed alpha
Helix 3	3	B	54	63	Right-handed alpha
Helix 4	4	B	64	78	Right-handed alpha
Helix 5	5	B	78	89	Right-handed alpha
Helix 6	6	B	90	93	Right-handed 310
Helix 7	7	C	45	52	Right-handed alpha
Helix 8	8	C	55	77	Right-handed alpha
Helix 9	9	D	54	63	Right-handed alpha
Helix 10	10	D	64	78	Right-handed alpha
Helix 11	11	D	78	89	Right-handed alpha
Helix 12	12	D	90	93	Right-handed 310
Helix 13	13	E	95	99	Right-handed 310
Helix 14	14	F	95	99	Right-handed 310
Helix 15	15	F	129	133	Right-handed 310
Helix 16	16	F	144	152	Right-handed alpha
Helix 17	17	F	211	215	Right-handed alpha
Helix 18	18	G	95	99	Right-handed 310
Helix 19	19	H	95	99	Right-handed 310
Helix 20	20	H	129	133	Right-handed 310
Helix 21	21	H	144	152	Right-handed alpha
Helix 22	22	H	211	215	Right-handed alpha

There are 30 sheets in PDB entry 4GG6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	29	35	anti-parallel
Strand 3	A	19	26	anti-parallel
Strand 4	A	5	14	anti-parallel
Strand 5	B	8	18	anti-parallel
Strand 6	B	23	32	anti-parallel
Strand 7	B	35	41	anti-parallel
Strand 8	B	47	49	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	132	134	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	138	139	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	118	123	anti-parallel
Strand 3	A	161	166	anti-parallel
Strand 4	A	174	178	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	116	120	anti-parallel
Strand 3	B	155	161	anti-parallel
Strand 4	B	142	144	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	116	120	anti-parallel
Strand 3	B	155	161	anti-parallel
Strand 4	B	148	149	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	173	176	anti-parallel
Strand 3	B	184	186	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	43	first strand
Strand 2	C	29	35	anti-parallel
Strand 3	C	19	26	anti-parallel
Strand 4	C	5	14	anti-parallel
Strand 5	D	8	18	anti-parallel
Strand 6	D	23	32	anti-parallel
Strand 7	D	35	41	anti-parallel
Strand 8	D	47	49	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	145	153	anti-parallel
Strand 4	C	132	134	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	145	153	anti-parallel
Strand 4	C	138	139	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	118	123	anti-parallel
Strand 3	C	161	166	anti-parallel
Strand 4	C	174	178	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	102	first strand
Strand 2	D	115	122	anti-parallel
Strand 3	D	155	161	anti-parallel
Strand 4	D	142	144	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	102	first strand
Strand 2	D	115	122	anti-parallel
Strand 3	D	155	161	anti-parallel
Strand 4	D	148	149	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	171	176	anti-parallel
Strand 3	D	184	188	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	122	127	parallel
Strand 3	E	100	108	anti-parallel
Strand 4	E	37	44	anti-parallel
Strand 5	E	50	56	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	24	first strand
Strand 2	E	86	91	anti-parallel
Strand 3	E	77	80	anti-parallel
Strand 4	E	65	67	anti-parallel

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There are 9 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	172	first strand
Strand 2	E	189	193	anti-parallel
Strand 3	E	149	154	anti-parallel
Strand 4	E	136	142	anti-parallel
Strand 5	F	137	142	anti-parallel
Strand 6	F	153	163	anti-parallel
Strand 7	F	201	210	anti-parallel
Strand 8	F	183	185	anti-parallel
Strand 9	E	177	178	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	172	first strand
Strand 2	E	189	193	anti-parallel
Strand 3	E	149	154	anti-parallel
Strand 4	E	136	142	anti-parallel
Strand 5	F	137	142	anti-parallel
Strand 6	F	153	163	anti-parallel
Strand 7	F	201	210	anti-parallel
Strand 8	F	190	191	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	19	24	anti-parallel
Strand 3	F	87	91	anti-parallel
Strand 4	F	76	80	anti-parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	122	127	parallel
Strand 3	F	100	107	anti-parallel
Strand 4	F	38	45	anti-parallel
Strand 5	F	49	57	anti-parallel
Strand 6	F	64	68	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	122	127	parallel
Strand 3	F	100	107	anti-parallel
Strand 4	F	117	118	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	177	179	first strand
Strand 2	F	168	174	anti-parallel
Strand 3	F	220	227	anti-parallel
Strand 4	F	246	253	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	122	127	parallel
Strand 3	G	100	108	anti-parallel
Strand 4	G	37	44	anti-parallel
Strand 5	G	50	56	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	24	first strand
Strand 2	G	86	91	anti-parallel
Strand 3	G	77	80	anti-parallel
Strand 4	G	65	67	anti-parallel

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There are 9 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	172	first strand
Strand 2	G	189	193	anti-parallel
Strand 3	G	149	154	anti-parallel
Strand 4	G	136	142	anti-parallel
Strand 5	H	137	142	anti-parallel
Strand 6	H	153	163	anti-parallel
Strand 7	H	201	210	anti-parallel
Strand 8	H	183	185	anti-parallel
Strand 9	G	177	178	anti-parallel

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There are 8 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	172	first strand
Strand 2	G	189	193	anti-parallel
Strand 3	G	149	154	anti-parallel
Strand 4	G	136	142	anti-parallel
Strand 5	H	137	142	anti-parallel
Strand 6	H	153	163	anti-parallel
Strand 7	H	201	210	anti-parallel
Strand 8	H	190	191	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	19	24	anti-parallel
Strand 3	H	87	91	anti-parallel
Strand 4	H	76	80	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	122	127	parallel
Strand 3	H	100	107	anti-parallel
Strand 4	H	38	45	anti-parallel
Strand 5	H	49	57	anti-parallel
Strand 6	H	64	68	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	122	127	parallel
Strand 3	H	100	107	anti-parallel
Strand 4	H	117	118	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	177	179	first strand
Strand 2	H	168	174	anti-parallel
Strand 3	H	220	227	anti-parallel
Strand 4	H	246	253	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GG6

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GG6