Analysis of interatomic Contacts of Structural Units in PDB entry:
4GG8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GG8 entry

There are 4 chains in PDB entry 4GG8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 LYS 3SER 202
F
 ASP 1ALA 244
B
 ASP 1ALA 244
A
 LYS 3SER 202
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4GG8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
E
79 83Right-handed 310
Helix 2
2
F
82 86Right-handed 310
Helix 3
3
F
117 121Right-handed 310
Helix 4
4
F
132 140Right-handed alpha
Helix 5
5
F
199 203Right-handed alpha
Helix 6
6
B
82 86Right-handed 310
Helix 7
7
B
117 121Right-handed 310
Helix 8
8
B
132 140Right-handed alpha
Helix 9
9
B
199 203Right-handed alpha
Helix 10
10
A
79 83Right-handed 310
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There are 19 sheets in PDB entry 4GG8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
44 50first strand
Strand 2
E
32 38anti-parallel
Strand 3
E
85 91anti-parallel
Strand 4
E
106 111anti-parallel
Strand 5
E
9 13parallel
Strand 6
A
9 13anti-parallel
Strand 7
A
106 111parallel
Strand 8
A
85 91anti-parallel
Strand 9
A
32 38anti-parallel
Strand 10
A
44 50anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
18 23first strand
Strand 2
E
70 75anti-parallel
Strand 3
E
61 64anti-parallel
Strand 4
E
55 56anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
120 122first strand
Strand 2
E
135 138anti-parallel
Strand 3
E
171 178anti-parallel
Strand 4
E
154 156anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
120 122first strand
Strand 2
E
135 138anti-parallel
Strand 3
E
171 178anti-parallel
Strand 4
E
160 162anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
5 7first strand
Strand 2
F
19 24anti-parallel
Strand 3
F
74 78anti-parallel
Strand 4
F
64 68anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 14first strand
Strand 2
F
110 115parallel
Strand 3
F
87 94anti-parallel
Strand 4
F
31 38anti-parallel
Strand 5
F
42 50anti-parallel
Strand 6
F
53 54anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 14first strand
Strand 2
F
110 115parallel
Strand 3
F
87 94anti-parallel
Strand 4
F
105 106anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
125 129first strand
Strand 2
F
141 151anti-parallel
Strand 3
F
189 198anti-parallel
Strand 4
F
171 173anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
125 129first strand
Strand 2
F
141 151anti-parallel
Strand 3
F
189 198anti-parallel
Strand 4
F
178 179anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
165 167first strand
Strand 2
F
156 162anti-parallel
Strand 3
F
208 215anti-parallel
Strand 4
F
234 241anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
74 78anti-parallel
Strand 4
B
64 68anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
110 115parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
31 38anti-parallel
Strand 5
B
42 50anti-parallel
Strand 6
B
53 54anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
110 115parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
105 106anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
141 151anti-parallel
Strand 3
B
189 198anti-parallel
Strand 4
B
171 173anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
141 151anti-parallel
Strand 3
B
189 198anti-parallel
Strand 4
B
178 179anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 167first strand
Strand 2
B
156 162anti-parallel
Strand 3
B
208 215anti-parallel
Strand 4
B
234 241anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 23first strand
Strand 2
A
70 75anti-parallel
Strand 3
A
61 64anti-parallel
Strand 4
A
55 56anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
135 138anti-parallel
Strand 3
A
171 178anti-parallel
Strand 4
A
154 156anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
135 138anti-parallel
Strand 3
A
171 178anti-parallel
Strand 4
A
160 162anti-parallel
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