Analysis of interatomic Contacts of Structural Units in PDB entry:
4GHL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GHL entry

There are 6 chains in PDB entry 4GHL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 A 1 U 18
F
 A 1 U 18
A
 HIS 198ILE 329
B
 LEU 208ILE 329
C
 LEU 208ILE 329
D
 LEU 208ILE 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 4GHL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
198 204Right-handed alpha
Helix 2
2
A
209 220Right-handed alpha
Helix 3
3
A
226 242Right-handed alpha
Helix 4
4
A
244 258Right-handed alpha
Helix 5
5
A
261 273Right-handed alpha
Helix 6
6
A
274 277Right-handed 310
Helix 7
7
A
288 292Right-handed 310
Helix 8
8
A
293 298Right-handed 310
Helix 9
9
A
308 311Right-handed 310
Helix 10
10
B
209 219Right-handed alpha
Helix 11
11
B
226 242Right-handed alpha
Helix 12
12
B
244 258Right-handed alpha
Helix 13
13
B
261 273Right-handed alpha
Helix 14
14
B
274 277Right-handed 310
Helix 15
15
B
288 292Right-handed 310
Helix 16
16
B
293 298Right-handed alpha
Helix 17
17
B
308 311Right-handed 310
Helix 18
18
C
209 220Right-handed alpha
Helix 19
19
C
226 242Right-handed alpha
Helix 20
20
C
244 258Right-handed alpha
Helix 21
21
C
261 273Right-handed alpha
Helix 22
22
C
274 277Right-handed 310
Helix 23
23
C
293 298Right-handed 310
Helix 24
24
C
308 311Right-handed 310
Helix 25
25
D
209 220Right-handed alpha
Helix 26
26
D
226 242Right-handed alpha
Helix 27
27
D
244 258Right-handed alpha
Helix 28
28
D
261 273Right-handed alpha
Helix 29
29
D
274 277Right-handed 310
Helix 30
30
D
293 298Right-handed 310
Helix 31
31
D
308 311Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 4GHL. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
313 318parallel
Strand 3
A
324 328anti-parallel
Strand 4
A
300 301anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 285first strand
Strand 2
B
313 318parallel
Strand 3
B
324 328anti-parallel
Strand 4
B
300 301anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
283 285first strand
Strand 2
C
313 318parallel
Strand 3
C
324 328anti-parallel
Strand 4
C
300 301anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
283 286first strand
Strand 2
D
313 319parallel
Strand 3
D
324 328anti-parallel
Strand 4
D
300 301anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il