Analysis of interatomic Contacts of Structural Units in PDB entry:
4GID

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GID entry

There are 4 chains in PDB entry 4GID (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 47	ASN 433
B	PHE 47	ASN 433
C	SER 46	ASN 433
D	PHE 47	ASN 433

There are 46 helices in PDB entry 4GID. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	101	105	Right-handed 310
Helix 2	2	A	171	175	Right-handed 310
Helix 3	3	A	183	192	Right-handed alpha
Helix 4	4	A	210	216	Right-handed alpha
Helix 5	5	A	228	230	Right-handed 310
Helix 6	6	A	264	270	Right-handed 310
Helix 7	7	A	286	300	Right-handed alpha
Helix 8	8	A	306	311	Right-handed alpha
Helix 9	9	A	324	328	Right-handed 310
Helix 10	10	A	349	353	Right-handed alpha
Helix 11	11	A	382	387	Right-handed alpha
Helix 12	12	A	395	397	Right-handed 310
Helix 13	13	B	101	105	Right-handed 310
Helix 14	14	B	171	175	Right-handed 310
Helix 15	15	B	183	192	Right-handed alpha
Helix 16	16	B	210	217	Right-handed alpha
Helix 17	17	B	228	230	Right-handed 310
Helix 18	18	B	264	270	Right-handed 310
Helix 19	19	B	286	300	Right-handed alpha
Helix 20	20	B	306	311	Right-handed alpha
Helix 21	21	B	324	328	Right-handed 310
Helix 22	22	B	349	353	Right-handed alpha
Helix 23	23	B	382	387	Right-handed alpha
Helix 24	24	C	101	105	Right-handed 310
Helix 25	25	C	171	175	Right-handed 310
Helix 26	26	C	183	192	Right-handed alpha
Helix 27	27	C	210	216	Right-handed alpha
Helix 28	28	C	228	230	Right-handed 310
Helix 29	29	C	264	270	Right-handed 310
Helix 30	30	C	286	300	Right-handed alpha
Helix 31	31	C	306	311	Right-handed alpha
Helix 32	32	C	324	328	Right-handed 310
Helix 33	33	C	349	353	Right-handed alpha
Helix 34	34	C	382	387	Right-handed alpha
Helix 35	35	D	47	51	Right-handed 310
Helix 36	36	D	101	105	Right-handed 310
Helix 37	37	D	171	175	Right-handed 310
Helix 38	38	D	183	192	Right-handed alpha
Helix 39	39	D	210	217	Right-handed alpha
Helix 40	40	D	228	230	Right-handed 310
Helix 41	41	D	266	270	Right-handed 310
Helix 42	42	D	286	300	Right-handed alpha
Helix 43	43	D	306	311	Right-handed alpha
Helix 44	44	D	324	328	Right-handed 310
Helix 45	45	D	349	353	Right-handed alpha
Helix 46	46	D	382	387	Right-handed alpha

There are 24 sheets in PDB entry 4GID. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	57	first strand
Strand 2	A	61	68	anti-parallel
Strand 3	A	73	80	anti-parallel
Strand 4	A	165	168	parallel
Strand 5	A	86	89	anti-parallel
Strand 6	A	142	154	parallel
Strand 7	A	123	134	anti-parallel
Strand 8	A	109	118	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	57	first strand
Strand 2	A	61	68	anti-parallel
Strand 3	A	123	134	anti-parallel
Strand 4	A	109	118	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	224	first strand
Strand 2	A	198	202	anti-parallel
Strand 3	A	389	394	anti-parallel
Strand 4	A	399	405	anti-parallel
Strand 5	A	232	240	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	251	256	anti-parallel
Strand 3	A	331	336	anti-parallel
Strand 4	A	343	348	anti-parallel
Strand 5	A	417	422	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	275	first strand
Strand 2	A	379	381	parallel
Strand 3	A	282	285	anti-parallel
Strand 4	A	372	375	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	319	first strand
Strand 2	A	365	370	anti-parallel
Strand 3	A	354	357	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	61	68	anti-parallel
Strand 3	B	73	80	anti-parallel
Strand 4	B	165	168	parallel
Strand 5	B	86	89	anti-parallel
Strand 6	B	142	154	parallel
Strand 7	B	123	134	anti-parallel
Strand 8	B	109	118	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	61	68	anti-parallel
Strand 3	B	123	134	anti-parallel
Strand 4	B	109	118	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	224	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	389	394	anti-parallel
Strand 4	B	399	405	anti-parallel
Strand 5	B	232	240	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	260	first strand
Strand 2	B	251	256	anti-parallel
Strand 3	B	331	336	anti-parallel
Strand 4	B	343	348	anti-parallel
Strand 5	B	417	422	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	275	first strand
Strand 2	B	379	381	parallel
Strand 3	B	282	285	anti-parallel
Strand 4	B	372	375	parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	318	first strand
Strand 2	B	366	370	anti-parallel
Strand 3	B	354	357	anti-parallel

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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	57	first strand
Strand 2	C	61	68	anti-parallel
Strand 3	C	73	80	anti-parallel
Strand 4	C	165	168	parallel
Strand 5	C	86	89	anti-parallel
Strand 6	C	143	154	parallel
Strand 7	C	123	134	anti-parallel
Strand 8	C	109	118	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	57	first strand
Strand 2	C	61	68	anti-parallel
Strand 3	C	123	134	anti-parallel
Strand 4	C	109	118	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	224	first strand
Strand 2	C	198	202	anti-parallel
Strand 3	C	389	394	anti-parallel
Strand 4	C	399	405	anti-parallel
Strand 5	C	232	240	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	260	first strand
Strand 2	C	251	256	anti-parallel
Strand 3	C	331	336	anti-parallel
Strand 4	C	343	348	anti-parallel
Strand 5	C	417	422	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	275	first strand
Strand 2	C	379	381	parallel
Strand 3	C	282	285	anti-parallel
Strand 4	C	372	375	parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	318	first strand
Strand 2	C	366	370	anti-parallel
Strand 3	C	354	357	anti-parallel

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There are 8 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	57	first strand
Strand 2	D	61	68	anti-parallel
Strand 3	D	73	80	anti-parallel
Strand 4	D	165	168	parallel
Strand 5	D	86	89	anti-parallel
Strand 6	D	142	154	parallel
Strand 7	D	123	134	anti-parallel
Strand 8	D	109	118	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	57	first strand
Strand 2	D	61	68	anti-parallel
Strand 3	D	123	134	anti-parallel
Strand 4	D	109	118	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	224	first strand
Strand 2	D	198	202	anti-parallel
Strand 3	D	389	394	anti-parallel
Strand 4	D	399	405	anti-parallel
Strand 5	D	232	240	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	249	first strand
Strand 2	D	273	275	anti-parallel
Strand 3	D	379	381	parallel
Strand 4	D	282	285	anti-parallel
Strand 5	D	372	375	parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	260	first strand
Strand 2	D	251	256	anti-parallel
Strand 3	D	331	336	anti-parallel
Strand 4	D	343	348	anti-parallel
Strand 5	D	417	422	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	318	first strand
Strand 2	D	366	370	anti-parallel
Strand 3	D	354	356	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GID

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GID