Analysis of interatomic Contacts of Structural Units in PDB entry:
4GS8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4GS8 entry

There are 2 chains in PDB entry 4GS8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 43	HIS 1011
B	ASN 43	HIS 1011

There are 91 helices in PDB entry 4GS8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	95	99	Right-handed 310
Helix 2	2	A	105	115	Right-handed alpha
Helix 3	3	A	125	133	Right-handed alpha
Helix 4	4	A	157	167	Right-handed alpha
Helix 5	5	A	168	170	Right-handed 310
Helix 6	6	A	175	195	Right-handed alpha
Helix 7	7	A	196	207	Right-handed alpha
Helix 8	8	A	213	217	Right-handed 310
Helix 9	9	A	222	227	Right-handed alpha
Helix 10	10	A	227	233	Right-handed alpha
Helix 11	11	A	236	249	Right-handed alpha
Helix 12	12	A	250	252	Right-handed 310
Helix 13	13	A	263	276	Right-handed alpha
Helix 14	14	A	294	298	Right-handed 310
Helix 15	15	A	322	326	Right-handed 310
Helix 16	16	A	329	339	Right-handed alpha
Helix 17	17	A	345	353	Right-handed alpha
Helix 18	18	A	380	385	Right-handed alpha
Helix 19	19	A	386	405	Right-handed alpha
Helix 20	20	A	407	424	Right-handed alpha
Helix 21	21	A	429	442	Right-handed alpha
Helix 22	22	A	445	449	Right-handed 310
Helix 23	23	A	460	469	Right-handed alpha
Helix 24	24	A	470	471	Right-handed 310
Helix 25	25	A	472	476	Right-handed 310
Helix 26	26	A	483	486	Right-handed 310
Helix 27	27	A	506	515	Right-handed alpha
Helix 28	28	A	581	584	Right-handed 310
Helix 29	29	A	586	614	Right-handed alpha
Helix 30	30	A	637	651	Right-handed alpha
Helix 31	31	A	655	673	Right-handed alpha
Helix 32	32	A	674	676	Right-handed 310
Helix 33	33	A	677	691	Right-handed alpha
Helix 34	34	A	696	704	Right-handed alpha
Helix 35	35	A	705	707	Right-handed 310
Helix 36	36	A	708	720	Right-handed alpha
Helix 37	37	A	734	754	Right-handed alpha
Helix 38	38	A	759	763	Right-handed 310
Helix 39	39	A	801	824	Right-handed alpha
Helix 40	40	A	855	877	Right-handed alpha
Helix 41	41	A	878	895	Right-handed alpha
Helix 42	42	A	899	913	Right-handed alpha
Helix 43	43	A	919	930	Right-handed alpha
Helix 44	44	A	932	944	Right-handed alpha
Helix 45	45	A	994	1001	Right-handed alpha
Helix 46	46	B	95	99	Right-handed 310
Helix 47	47	B	105	114	Right-handed alpha
Helix 48	48	B	115	117	Right-handed 310
Helix 49	49	B	125	134	Right-handed alpha
Helix 50	50	B	157	167	Right-handed alpha
Helix 51	51	B	168	170	Right-handed 310
Helix 52	52	B	175	195	Right-handed alpha
Helix 53	53	B	196	207	Right-handed alpha
Helix 54	54	B	213	217	Right-handed 310
Helix 55	55	B	222	227	Right-handed alpha
Helix 56	56	B	227	233	Right-handed alpha
Helix 57	57	B	236	249	Right-handed alpha
Helix 58	58	B	250	252	Right-handed 310
Helix 59	59	B	263	276	Right-handed alpha
Helix 60	60	B	294	298	Right-handed 310
Helix 61	61	B	322	326	Right-handed 310
Helix 62	62	B	329	339	Right-handed alpha
Helix 63	63	B	345	353	Right-handed alpha
Helix 64	64	B	380	386	Right-handed alpha
Helix 65	65	B	386	405	Right-handed alpha
Helix 66	66	B	407	424	Right-handed alpha
Helix 67	67	B	429	441	Right-handed alpha
Helix 68	68	B	445	447	Right-handed 310
Helix 69	69	B	448	453	Right-handed alpha
Helix 70	70	B	460	469	Right-handed alpha
Helix 71	71	B	470	471	Right-handed 310
Helix 72	72	B	472	475	Right-handed 310
Helix 73	73	B	483	486	Right-handed 310
Helix 74	74	B	506	515	Right-handed alpha
Helix 75	75	B	581	584	Right-handed 310
Helix 76	76	B	586	614	Right-handed alpha
Helix 77	77	B	637	650	Right-handed alpha
Helix 78	78	B	655	672	Right-handed alpha
Helix 79	79	B	673	676	Right-handed 310
Helix 80	80	B	677	691	Right-handed alpha
Helix 81	81	B	696	704	Right-handed alpha
Helix 82	82	B	708	721	Right-handed alpha
Helix 83	83	B	734	754	Right-handed alpha
Helix 84	84	B	759	763	Right-handed 310
Helix 85	85	B	801	824	Right-handed alpha
Helix 86	86	B	855	876	Right-handed alpha
Helix 87	87	B	878	894	Right-handed alpha
Helix 88	88	B	899	913	Right-handed alpha
Helix 89	89	B	919	931	Right-handed alpha
Helix 90	90	B	932	944	Right-handed alpha
Helix 91	91	B	994	1001	Right-handed alpha

There are 10 sheets in PDB entry 4GS8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	63	69	anti-parallel
Strand 3	A	74	79	anti-parallel
Strand 4	A	254	260	parallel
Strand 5	A	85	92	anti-parallel
Strand 6	A	147	154	anti-parallel
Strand 7	A	137	142	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	367	first strand
Strand 2	A	370	378	anti-parallel
Strand 3	A	312	320	anti-parallel
Strand 4	A	477	481	anti-parallel
Strand 5	A	300	304	parallel
Strand 6	A	499	504	anti-parallel
Strand 7	A	491	492	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	553	first strand
Strand 2	A	557	563	anti-parallel
Strand 3	A	722	731	parallel
Strand 4	A	571	579	anti-parallel
Strand 5	A	626	634	anti-parallel
Strand 6	A	616	623	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	553	first strand
Strand 2	A	557	563	anti-parallel
Strand 3	A	722	731	parallel
Strand 4	A	756	757	parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	833	840	first strand
Strand 2	A	843	852	anti-parallel
Strand 3	A	789	799	anti-parallel
Strand 4	A	952	959	anti-parallel
Strand 5	A	776	782	parallel
Strand 6	A	990	991	parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	63	69	anti-parallel
Strand 3	B	74	79	anti-parallel
Strand 4	B	254	260	parallel
Strand 5	B	85	92	anti-parallel
Strand 6	B	147	154	anti-parallel
Strand 7	B	137	142	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	367	first strand
Strand 2	B	370	378	anti-parallel
Strand 3	B	312	320	anti-parallel
Strand 4	B	477	481	anti-parallel
Strand 5	B	300	304	parallel
Strand 6	B	499	504	anti-parallel
Strand 7	B	491	492	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	549	553	first strand
Strand 2	B	557	563	anti-parallel
Strand 3	B	722	731	parallel
Strand 4	B	571	579	anti-parallel
Strand 5	B	626	634	anti-parallel
Strand 6	B	616	622	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	549	553	first strand
Strand 2	B	557	563	anti-parallel
Strand 3	B	722	731	parallel
Strand 4	B	756	757	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	832	840	first strand
Strand 2	B	843	852	anti-parallel
Strand 3	B	789	799	anti-parallel
Strand 4	B	952	959	anti-parallel
Strand 5	B	775	782	parallel
Strand 6	B	990	991	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4GS8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4GS8