Analysis of interatomic Contacts of Structural Units in PDB entry:
4GVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GVX entry

There are 4 chains in PDB entry 4GVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 258
B
 MET 1VAL 258
C
 MET 1VAL 258
D
 MET 1VAL 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 4GVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
43 54Right-handed alpha
Helix 3
3
A
66 82Right-handed alpha
Helix 4
4
A
102 132Right-handed alpha
Helix 5
5
A
141 146Right-handed alpha
Helix 6
6
A
150 172Right-handed alpha
Helix 7
7
A
173 175Right-handed 310
Helix 8
8
A
188 196Right-handed alpha
Helix 9
9
A
200 210Right-handed alpha
Helix 10
10
A
220 233Right-handed alpha
Helix 11
11
A
234 237Right-handed 310
Helix 12
12
B
17 30Right-handed alpha
Helix 13
13
B
43 54Right-handed alpha
Helix 14
14
B
66 82Right-handed alpha
Helix 15
15
B
102 114Right-handed alpha
Helix 16
16
B
114 132Right-handed alpha
Helix 17
17
B
141 146Right-handed alpha
Helix 18
18
B
150 172Right-handed alpha
Helix 19
19
B
173 175Right-handed 310
Helix 20
20
B
188 196Right-handed alpha
Helix 21
21
B
200 210Right-handed alpha
Helix 22
22
B
220 233Right-handed alpha
Helix 23
23
B
234 237Right-handed 310
Helix 24
24
C
17 30Right-handed alpha
Helix 25
25
C
43 54Right-handed alpha
Helix 26
26
C
66 82Right-handed alpha
Helix 27
27
C
102 113Right-handed alpha
Helix 28
28
C
113 132Right-handed alpha
Helix 29
29
C
141 146Right-handed alpha
Helix 30
30
C
150 172Right-handed alpha
Helix 31
31
C
173 175Right-handed 310
Helix 32
32
C
188 196Right-handed alpha
Helix 33
33
C
200 210Right-handed alpha
Helix 34
34
C
220 233Right-handed alpha
Helix 35
35
C
234 237Right-handed 310
Helix 36
36
D
17 30Right-handed alpha
Helix 37
37
D
43 54Right-handed alpha
Helix 38
38
D
66 82Right-handed alpha
Helix 39
39
D
102 114Right-handed alpha
Helix 40
40
D
114 132Right-handed alpha
Helix 41
41
D
141 146Right-handed alpha
Helix 42
42
D
150 172Right-handed alpha
Helix 43
43
D
173 175Right-handed 310
Helix 44
44
D
188 196Right-handed alpha
Helix 45
45
D
200 210Right-handed alpha
Helix 46
46
D
220 233Right-handed alpha
Helix 47
47
D
234 237Right-handed 310
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There are 4 sheets in PDB entry 4GVX. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
33 38parallel
Strand 3
A
9 13parallel
Strand 4
A
86 89parallel
Strand 5
A
134 138parallel
Strand 6
A
177 183parallel
Strand 7
A
243 246parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
33 38parallel
Strand 3
B
9 13parallel
Strand 4
B
86 89parallel
Strand 5
B
134 138parallel
Strand 6
B
177 183parallel
Strand 7
B
243 246parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 61first strand
Strand 2
C
33 38parallel
Strand 3
C
9 13parallel
Strand 4
C
86 89parallel
Strand 5
C
134 138parallel
Strand 6
C
177 183parallel
Strand 7
C
243 246parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 61first strand
Strand 2
D
33 38parallel
Strand 3
D
9 13parallel
Strand 4
D
86 89parallel
Strand 5
D
134 138parallel
Strand 6
D
177 182parallel
Strand 7
D
243 245parallel
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