Analysis of interatomic Contacts of Structural Units in PDB entry:
4GZM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4GZM entry

There are 2 chains in PDB entry 4GZM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 4LEU 177
B
ILE 4LEU 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4GZM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 25Right-handed alpha
Helix 2
2
A
61 65Right-handed 310
Helix 3
3
A
68 72Right-handed 310
Helix 4
4
A
86 96Right-handed alpha
Helix 5
5
A
96 105Right-handed alpha
Helix 6
6
A
122 130Right-handed alpha
Helix 7
7
A
131 133Right-handed 310
Helix 8
8
A
138 149Right-handed alpha
Helix 9
9
A
164 177Right-handed alpha
Helix 10
10
B
15 25Right-handed alpha
Helix 11
11
B
61 65Right-handed 310
Helix 12
12
B
68 72Right-handed 310
Helix 13
13
B
86 96Right-handed alpha
Helix 14
14
B
96 105Right-handed alpha
Helix 15
15
B
122 130Right-handed alpha
Helix 16
16
B
131 133Right-handed 310
Helix 17
17
B
138 149Right-handed alpha
Helix 18
18
B
164 177Right-handed alpha
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There are 2 sheets in PDB entry 4GZM. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
40 46first strand
Strand 2
A
49 57anti-parallel
Strand 3
A
5 10parallel
Strand 4
A
77 83parallel
Strand 5
A
110 115parallel
Strand 6
A
153 156parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
40 46first strand
Strand 2
B
49 57anti-parallel
Strand 3
B
5 10parallel
Strand 4
B
77 83parallel
Strand 5
B
110 115parallel
Strand 6
B
153 156parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il