Analysis of interatomic Contacts of Structural Units in PDB entry:
4H13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4H13 entry

There are 8 chains in PDB entry 4H13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 215
B
 MET 1PHE 160
C
 TYR 1ASN 288
D
 ASP 9VAL 179
E
 MET 1ILE 32
F
 THR 2ALA 32
G
 MET 1GLY 37
H
 MET 1LEU 29
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4H13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 13Right-handed alpha
Helix 2
2
A
13 22Right-handed alpha
Helix 3
3
A
31 34Right-handed 310
Helix 4
4
A
35 55Right-handed alpha
Helix 5
5
A
64 75Right-handed alpha
Helix 6
6
A
78 107Right-handed alpha
Helix 7
7
A
111 113Right-handed 310
Helix 8
8
A
114 137Right-handed alpha
Helix 9
9
A
141 154Right-handed alpha
Helix 10
10
A
155 158Right-handed 310
Helix 11
11
A
161 171Right-handed alpha
Helix 12
12
A
176 189Right-handed alpha
Helix 13
13
A
189 210Right-handed alpha
Helix 14
14
B
11 21Right-handed alpha
Helix 15
15
B
39 58Right-handed alpha
Helix 16
16
B
78 80Right-handed 310
Helix 17
17
B
81 89Right-handed alpha
Helix 18
18
B
93 115Right-handed alpha
Helix 19
19
B
116 118Right-handed 310
Helix 20
20
B
126 149Right-handed alpha
Helix 21
21
C
2 9Right-handed alpha
Helix 22
22
C
20 25Right-handed 310
Helix 23
23
C
91 99Right-handed alpha
Helix 24
24
C
251 288Right-handed alpha
Helix 25
25
D
13 43Right-handed alpha
Helix 26
26
D
66 73Right-handed alpha
Helix 27
27
D
83 87Right-handed 310
Helix 28
28
E
2 28Right-handed alpha
Helix 29
29
F
3 31Right-handed alpha
Helix 30
30
G
3 30Right-handed alpha
Helix 31
31
H
2 26Right-handed alpha
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There are 7 sheets in PDB entry 4H13. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
B
29 30anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 35first strand
Strand 2
C
45 51anti-parallel
Strand 3
C
126 132anti-parallel
Strand 4
C
83 84anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 40first strand
Strand 2
C
239 249parallel
Strand 3
C
145 155anti-parallel
Strand 4
C
71 77anti-parallel
Strand 5
C
113 120anti-parallel
Strand 6
C
104 105anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 198first strand
Strand 2
C
208 210anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 79first strand
Strand 2
D
89 92anti-parallel
Strand 3
D
104 105anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
117 118first strand
Strand 2
D
123 125anti-parallel
Strand 3
D
132 133anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
151 154first strand
Strand 2
D
161 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il