Analysis of interatomic Contacts of Structural Units in PDB entry:
4H3P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4H3P entry

There are 4 chains in PDB entry 4H3P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11ARG 359
D
 PRO 11ARG 359
B
 PRO 712VAL 727
E
 PRO 712ARG 728
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 4H3P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 78Right-handed alpha
Helix 2
2
A
112 117Right-handed alpha
Helix 3
3
A
122 143Right-handed alpha
Helix 4
4
A
151 153Right-handed 310
Helix 5
5
A
195 199Right-handed 310
Helix 6
6
A
207 224Right-handed alpha
Helix 7
7
A
232 245Right-handed alpha
Helix 8
8
A
260 266Right-handed alpha
Helix 9
9
A
283 294Right-handed alpha
Helix 10
10
A
297 301Right-handed 310
Helix 11
11
A
303 309Right-handed alpha
Helix 12
12
A
310 314Right-handed 310
Helix 13
13
A
318 322Right-handed 310
Helix 14
14
A
339 352Right-handed alpha
Helix 15
15
A
353 355Right-handed 310
Helix 16
16
D
61 78Right-handed alpha
Helix 17
17
D
112 116Right-handed alpha
Helix 18
18
D
122 143Right-handed alpha
Helix 19
19
D
151 153Right-handed 310
Helix 20
20
D
190 194Right-handed 310
Helix 21
21
D
195 201Right-handed alpha
Helix 22
22
D
207 224Right-handed alpha
Helix 23
23
D
232 245Right-handed alpha
Helix 24
24
D
261 267Right-handed alpha
Helix 25
25
D
283 294Right-handed alpha
Helix 26
26
D
297 301Right-handed 310
Helix 27
27
D
303 309Right-handed alpha
Helix 28
28
D
310 314Right-handed 310
Helix 29
29
D
318 322Right-handed 310
Helix 30
30
D
339 351Right-handed alpha
Helix 31
31
D
352 355Right-handed 310
Helix 32
32
B
716 719Right-handed 310
Helix 33
33
B
720 725Right-handed alpha
Helix 34
34
E
716 719Right-handed 310
Helix 35
35
E
720 725Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4H3P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
17 19anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 33first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
49 56anti-parallel
Strand 4
A
101 106anti-parallel
Strand 5
A
88 90anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
155 157anti-parallel
Strand 3
A
163 165anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
172 173anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 14first strand
Strand 2
D
17 19anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 33first strand
Strand 2
D
37 44anti-parallel
Strand 3
D
49 56anti-parallel
Strand 4
D
101 106anti-parallel
Strand 5
D
88 90anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
110 111first strand
Strand 2
D
155 157anti-parallel
Strand 3
D
163 165anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 146first strand
Strand 2
D
172 173anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il