Analysis of interatomic Contacts of Structural Units in PDB entry:
4HMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HMY entry

There are 5 chains in PDB entry 4HMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7PRO 585
B
 LYS 12TYR 574
M
 SER 2THR 422
S
 MET 1SER 145
C
 GLU 17LYS 181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 93 helices in PDB entry 4HMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 17Right-handed 310
Helix 2
2
A
22 34Right-handed alpha
Helix 3
3
A
35 38Right-handed 310
Helix 4
4
A
48 59Right-handed alpha
Helix 5
5
A
63 67Right-handed 310
Helix 6
6
A
70 75Right-handed alpha
Helix 7
7
A
78 92Right-handed alpha
Helix 8
8
A
100 111Right-handed alpha
Helix 9
9
A
117 130Right-handed alpha
Helix 10
10
A
139 148Right-handed alpha
Helix 11
11
A
150 168Right-handed alpha
Helix 12
12
A
171 176Right-handed 310
Helix 13
13
A
187 202Right-handed alpha
Helix 14
14
A
204 214Right-handed alpha
Helix 15
15
A
215 227Right-handed alpha
Helix 16
16
A
242 257Right-handed alpha
Helix 17
17
A
261 266Right-handed alpha
Helix 18
18
A
267 277Right-handed alpha
Helix 19
19
A
282 298Right-handed alpha
Helix 20
20
A
302 318Right-handed alpha
Helix 21
21
A
323 337Right-handed alpha
Helix 22
22
A
339 344Right-handed alpha
Helix 23
23
A
346 354Right-handed alpha
Helix 24
24
A
358 372Right-handed alpha
Helix 25
25
A
373 376Right-handed 310
Helix 26
26
A
377 392Right-handed alpha
Helix 27
27
A
393 411Right-handed alpha
Helix 28
28
A
414 429Right-handed alpha
Helix 29
29
A
436 448Right-handed alpha
Helix 30
30
A
451 466Right-handed alpha
Helix 31
31
A
470 483Right-handed alpha
Helix 32
32
A
501 515Right-handed alpha
Helix 33
33
A
519 533Right-handed alpha
Helix 34
34
A
534 536Right-handed 310
Helix 35
35
A
540 551Right-handed alpha
Helix 36
36
A
552 554Right-handed 310
Helix 37
37
A
556 571Right-handed alpha
Helix 38
38
A
575 583Right-handed alpha
Helix 39
39
B
15 22Right-handed alpha
Helix 40
40
B
27 43Right-handed alpha
Helix 41
41
B
47 49Right-handed 310
Helix 42
42
B
50 59Right-handed alpha
Helix 43
43
B
63 78Right-handed alpha
Helix 44
44
B
80 85Right-handed alpha
Helix 45
45
B
88 95Right-handed alpha
Helix 46
46
B
99 111Right-handed alpha
Helix 47
47
B
117 131Right-handed alpha
Helix 48
48
B
134 150Right-handed alpha
Helix 49
49
B
157 168Right-handed alpha
Helix 50
50
B
173 188Right-handed alpha
Helix 51
51
B
200 213Right-handed alpha
Helix 52
52
B
215 227Right-handed alpha
Helix 53
53
B
233 245Right-handed alpha
Helix 54
54
B
253 266Right-handed alpha
Helix 55
55
B
275 283Right-handed alpha
Helix 56
56
B
284 291Right-handed alpha
Helix 57
57
B
292 294Right-handed 310
Helix 58
58
B
295 313Right-handed alpha
Helix 59
59
B
331 343Right-handed alpha
Helix 60
60
B
350 362Right-handed alpha
Helix 61
61
B
366 384Right-handed alpha
Helix 62
62
B
384 400Right-handed alpha
Helix 63
63
B
403 421Right-handed alpha
Helix 64
64
B
428 433Right-handed alpha
Helix 65
65
B
435 439Right-handed 310
Helix 66
66
B
441 455Right-handed alpha
Helix 67
67
B
461 469Right-handed alpha
Helix 68
68
B
477 494Right-handed alpha
Helix 69
69
B
495 498Right-handed 310
Helix 70
70
B
499 512Right-handed alpha
Helix 71
71
B
516 531Right-handed alpha
Helix 72
72
B
556 564Right-handed alpha
Helix 73
73
B
565 567Right-handed 310
Helix 74
74
B
569 573Right-handed 310
Helix 75
75
M
28 31Right-handed 310
Helix 76
76
M
32 43Right-handed alpha
Helix 77
77
M
76 95Right-handed alpha
Helix 78
78
M
99 118Right-handed alpha
Helix 79
79
M
128 132Right-handed 310
Helix 80
80
M
149 155Right-handed alpha
Helix 81
81
M
243 248Right-handed alpha
Helix 82
82
S
24 41Right-handed alpha
Helix 83
83
S
76 96Right-handed alpha
Helix 84
84
S
100 106Right-handed alpha
Helix 85
85
S
106 116Right-handed alpha
Helix 86
86
S
128 137Right-handed alpha
Helix 87
87
C
29 39Right-handed alpha
Helix 88
88
C
71 82Right-handed 310
Helix 89
89
C
96 98Right-handed 310
Helix 90
90
C
99 112Right-handed alpha
Helix 91
91
C
135 143Right-handed alpha
Helix 92
92
C
144 148Right-handed 310
Helix 93
93
C
165 178Right-handed alpha
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There are 9 sheets in PDB entry 4HMY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
14 19first strand
Strand 2
M
5 10anti-parallel
Strand 3
M
65 71anti-parallel
Strand 4
M
56 62anti-parallel
Strand 5
M
49 51anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
236 238first strand
Strand 2
M
261 267anti-parallel
Strand 3
M
196 203anti-parallel
Strand 4
M
170 180anti-parallel
Strand 5
M
407 411parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
236 238first strand
Strand 2
M
261 267anti-parallel
Strand 3
M
196 203anti-parallel
Strand 4
M
170 180anti-parallel
Strand 5
M
414 417parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
212 213first strand
Strand 2
M
394 395anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
281 286first strand
Strand 2
M
290 295anti-parallel
Strand 3
M
356 357anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
307 314first strand
Strand 2
M
340 348anti-parallel
Strand 3
M
331 335anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
14 19first strand
Strand 2
S
2 8anti-parallel
Strand 3
S
65 72anti-parallel
Strand 4
S
55 62anti-parallel
Strand 5
S
49 52anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
118 119first strand
Strand 2
S
122 123anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 57first strand
Strand 2
C
62 67anti-parallel
Strand 3
C
18 23parallel
Strand 4
C
87 93parallel
Strand 5
C
120 126parallel
Strand 6
C
153 155parallel
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