Analysis of interatomic Contacts of Structural Units in PDB entry:
4ID7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ID7 entry

There is 1 chain in PDB entry 4ID7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 117GLN 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4ID7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
170 184Right-handed alpha
Helix 2
2
A
212 220Right-handed alpha
Helix 3
3
A
225 246Right-handed alpha
Helix 4
4
A
254 256Right-handed 310
Helix 5
5
A
293 297Right-handed 310
Helix 6
6
A
298 305Right-handed alpha
Helix 7
7
A
308 325Right-handed alpha
Helix 8
8
A
335 345Right-handed alpha
Helix 9
9
A
357 368Right-handed alpha
Helix 10
10
A
371 375Right-handed 310
Helix 11
11
A
377 389Right-handed alpha
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There are 4 sheets in PDB entry 4ID7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
126 134first strand
Strand 2
A
139 146anti-parallel
Strand 3
A
152 158anti-parallel
Strand 4
A
203 206anti-parallel
Strand 5
A
192 195anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
248 249first strand
Strand 2
A
275 276anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
258 262first strand
Strand 2
A
265 268anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
284 285first strand
Strand 2
A
306 307anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il