Analysis of interatomic Contacts of Structural Units in PDB entry:
4IIE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4IIE entry

There are 2 chains in PDB entry 4IIE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 22GLN 860
B
 LEU 22GLN 860
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 4IIE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 39Right-handed 310
Helix 2
2
A
40 52Right-handed alpha
Helix 3
3
A
55 64Right-handed alpha
Helix 4
4
A
80 84Right-handed 310
Helix 5
5
A
108 116Right-handed alpha
Helix 6
6
A
117 135Right-handed alpha
Helix 7
7
A
156 160Right-handed 310
Helix 8
8
A
164 182Right-handed alpha
Helix 9
9
A
201 208Right-handed alpha
Helix 10
10
A
221 228Right-handed alpha
Helix 11
11
A
230 239Right-handed alpha
Helix 12
12
A
259 264Right-handed alpha
Helix 13
13
A
287 293Right-handed alpha
Helix 14
14
A
313 322Right-handed alpha
Helix 15
15
A
326 344Right-handed alpha
Helix 16
16
A
345 349Right-handed 310
Helix 17
17
A
388 399Right-handed alpha
Helix 18
18
A
423 426Right-handed 310
Helix 19
19
A
435 439Right-handed 310
Helix 20
20
A
461 473Right-handed alpha
Helix 21
21
A
485 496Right-handed alpha
Helix 22
22
A
529 539Right-handed alpha
Helix 23
23
A
574 576Right-handed 310
Helix 24
24
A
577 587Right-handed alpha
Helix 25
25
A
604 608Right-handed 310
Helix 26
26
A
633 640Right-handed alpha
Helix 27
27
A
690 695Right-handed 310
Helix 28
28
A
715 721Right-handed alpha
Helix 29
29
A
728 733Right-handed 310
Helix 30
30
A
755 759Right-handed 310
Helix 31
31
A
819 823Right-handed alpha
Helix 32
32
B
37 39Right-handed 310
Helix 33
33
B
40 52Right-handed alpha
Helix 34
34
B
55 64Right-handed alpha
Helix 35
35
B
80 84Right-handed 310
Helix 36
36
B
108 116Right-handed alpha
Helix 37
37
B
117 135Right-handed alpha
Helix 38
38
B
156 160Right-handed 310
Helix 39
39
B
164 182Right-handed alpha
Helix 40
40
B
201 208Right-handed alpha
Helix 41
41
B
221 228Right-handed alpha
Helix 42
42
B
230 239Right-handed alpha
Helix 43
43
B
259 264Right-handed alpha
Helix 44
44
B
287 293Right-handed alpha
Helix 45
45
B
313 322Right-handed alpha
Helix 46
46
B
326 344Right-handed alpha
Helix 47
47
B
345 349Right-handed 310
Helix 48
48
B
388 399Right-handed alpha
Helix 49
49
B
423 426Right-handed 310
Helix 50
50
B
435 439Right-handed 310
Helix 51
51
B
461 473Right-handed alpha
Helix 52
52
B
485 494Right-handed alpha
Helix 53
53
B
529 541Right-handed alpha
Helix 54
54
B
574 576Right-handed 310
Helix 55
55
B
577 587Right-handed alpha
Helix 56
56
B
604 608Right-handed 310
Helix 57
57
B
633 640Right-handed alpha
Helix 58
58
B
690 695Right-handed 310
Helix 59
59
B
715 721Right-handed alpha
Helix 60
60
B
729 733Right-handed 310
Helix 61
61
B
755 759Right-handed 310
Helix 62
62
B
819 823Right-handed alpha
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There are 18 sheets in PDB entry 4IIE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
89 91anti-parallel
Strand 3
A
139 140parallel
Strand 4
A
185 191parallel
Strand 5
A
243 246parallel
Strand 6
A
276 279parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
250 251anti-parallel
Strand 3
A
217 219parallel
Strand 4
A
623 625parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 367first strand
Strand 2
A
372 377anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 405first strand
Strand 2
A
565 570anti-parallel
Strand 3
A
544 550parallel
Strand 4
A
498 505parallel
Strand 5
A
417 421parallel
Strand 6
A
476 480parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 514first strand
Strand 2
A
517 518anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
657 666first strand
Strand 2
A
761 771anti-parallel
Strand 3
A
810 818anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
777 779first strand
Strand 2
A
803 805anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
796 800first strand
Strand 2
A
782 786anti-parallel
Strand 3
A
839 844anti-parallel
Strand 4
A
852 856anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
824 826first strand
Strand 2
A
831 833anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
89 91anti-parallel
Strand 3
B
139 140parallel
Strand 4
B
185 191parallel
Strand 5
B
243 246parallel
Strand 6
B
276 279parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 255first strand
Strand 2
B
250 251anti-parallel
Strand 3
B
217 219parallel
Strand 4
B
623 625parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 367first strand
Strand 2
B
372 377anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 405first strand
Strand 2
B
565 570anti-parallel
Strand 3
B
544 550parallel
Strand 4
B
498 505parallel
Strand 5
B
417 421parallel
Strand 6
B
476 480parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
513 514first strand
Strand 2
B
517 518anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
657 666first strand
Strand 2
B
761 771anti-parallel
Strand 3
B
810 818anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
777 779first strand
Strand 2
B
803 805anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
796 800first strand
Strand 2
B
782 786anti-parallel
Strand 3
B
840 844anti-parallel
Strand 4
B
852 855anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
824 826first strand
Strand 2
B
831 833anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il