Analysis of interatomic Contacts of Structural Units in PDB entry:
4IM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4IM0 entry

There is 1 chain in PDB entry 4IM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY -1THR 657
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4IM0. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
48 62Right-handed alpha
Helix 2
2
A
94 100Right-handed alpha
Helix 3
3
A
101 104Right-handed 310
Helix 4
4
A
108 129Right-handed alpha
Helix 5
5
A
176 180Right-handed 310
Helix 6
6
A
181 187Right-handed alpha
Helix 7
7
A
201 217Right-handed alpha
Helix 8
8
A
230 240Right-handed alpha
Helix 9
9
A
270 285Right-handed alpha
Helix 10
10
A
294 307Right-handed alpha
Helix 11
11
A
331 344Right-handed alpha
Helix 12
12
A
346 350Right-handed 310
Helix 13
13
A
366 370Right-handed 310
Helix 14
14
A
407 481Right-handed alpha
Helix 15
15
A
498 527Right-handed alpha
Helix 16
16
A
534 540Right-handed alpha
Helix 17
17
A
543 546Right-handed 310
Helix 18
18
A
547 572Right-handed alpha
Helix 19
19
A
576 604Right-handed alpha
Helix 20
20
A
604 648Right-handed alpha
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There are 5 sheets in PDB entry 4IM0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1 3first strand
Strand 2
A
7 10anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
14 17anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1 3first strand
Strand 2
A
7 10anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
34 40anti-parallel
Strand 5
A
82 86anti-parallel
Strand 6
A
70 75anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
92 93first strand
Strand 2
A
141 145anti-parallel
Strand 3
A
151 155anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
221 222first strand
Strand 2
A
247 250parallel
Strand 3
A
257 260anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
320 326first strand
Strand 2
A
309 315anti-parallel
Strand 3
A
379 382parallel
Strand 4
A
351 354anti-parallel
Strand 5
A
357 359anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il