Analysis of interatomic Contacts of Structural Units in PDB entry:
4J0O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4J0O entry

There are 4 chains in PDB entry 4J0O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	ASN 284
B	ASN 3	ASN 284
C	ASN 3	ASN 284
D	ASN 3	ASN 284

There are 12 helices in PDB entry 4J0O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	187	192	Right-handed 310
Helix 2	2	A	194	198	Right-handed 310
Helix 3	3	A	199	204	Right-handed alpha
Helix 4	4	B	187	192	Right-handed 310
Helix 5	5	B	194	198	Right-handed 310
Helix 6	6	B	199	204	Right-handed alpha
Helix 7	7	C	187	192	Right-handed 310
Helix 8	8	C	194	198	Right-handed 310
Helix 9	9	C	199	204	Right-handed alpha
Helix 10	10	D	187	192	Right-handed 310
Helix 11	11	D	194	198	Right-handed 310
Helix 12	12	D	199	204	Right-handed alpha

There are 24 sheets in PDB entry 4J0O. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	11	22	anti-parallel
Strand 3	A	27	38	anti-parallel
Strand 4	A	43	55	anti-parallel
Strand 5	A	209	217	anti-parallel
Strand 6	A	89	95	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	11	22	anti-parallel
Strand 3	A	27	38	anti-parallel
Strand 4	A	43	55	anti-parallel
Strand 5	A	205	206	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	69	84	anti-parallel
Strand 3	A	153	160	anti-parallel
Strand 4	A	142	149	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	69	84	anti-parallel
Strand 3	A	223	242	anti-parallel
Strand 4	A	250	272	anti-parallel
Strand 5	A	278	283	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	104	112	anti-parallel
Strand 3	A	131	138	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	165	first strand
Strand 2	A	168	171	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	11	22	anti-parallel
Strand 3	B	27	38	anti-parallel
Strand 4	B	43	55	anti-parallel
Strand 5	B	209	217	anti-parallel
Strand 6	B	89	95	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	11	22	anti-parallel
Strand 3	B	27	38	anti-parallel
Strand 4	B	43	55	anti-parallel
Strand 5	B	205	206	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	69	84	anti-parallel
Strand 3	B	153	160	anti-parallel
Strand 4	B	142	149	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	69	84	anti-parallel
Strand 3	B	223	242	anti-parallel
Strand 4	B	250	272	anti-parallel
Strand 5	B	278	283	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	121	first strand
Strand 2	B	104	112	anti-parallel
Strand 3	B	131	138	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	168	171	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	11	22	anti-parallel
Strand 3	C	27	38	anti-parallel
Strand 4	C	43	55	anti-parallel
Strand 5	C	209	217	anti-parallel
Strand 6	C	89	95	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	11	22	anti-parallel
Strand 3	C	27	38	anti-parallel
Strand 4	C	43	55	anti-parallel
Strand 5	C	205	206	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	62	first strand
Strand 2	C	69	84	anti-parallel
Strand 3	C	153	160	anti-parallel
Strand 4	C	142	149	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	62	first strand
Strand 2	C	69	84	anti-parallel
Strand 3	C	223	242	anti-parallel
Strand 4	C	250	272	anti-parallel
Strand 5	C	278	283	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	104	112	anti-parallel
Strand 3	C	131	138	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	168	171	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	11	22	anti-parallel
Strand 3	D	27	38	anti-parallel
Strand 4	D	43	55	anti-parallel
Strand 5	D	209	217	anti-parallel
Strand 6	D	89	95	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	11	22	anti-parallel
Strand 3	D	27	38	anti-parallel
Strand 4	D	43	55	anti-parallel
Strand 5	D	205	206	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	62	first strand
Strand 2	D	69	84	anti-parallel
Strand 3	D	153	160	anti-parallel
Strand 4	D	142	149	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	62	first strand
Strand 2	D	69	84	anti-parallel
Strand 3	D	223	242	anti-parallel
Strand 4	D	250	272	anti-parallel
Strand 5	D	278	283	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	104	112	anti-parallel
Strand 3	D	131	138	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	165	first strand
Strand 2	D	168	171	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4J0O

Analysis of interatomic Contacts of Structural Units in PDB entry:
4J0O