Analysis of interatomic Contacts of Structural Units in PDB entry:
4J1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J1R entry

There are 8 chains in PDB entry 4J1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 36SER 215
A
 ILE 217ARG 383
B
 LYS 36SER 215
B
 ILE 217ILE 384
C
 LYS 36SER 215
C
 ILE 217ILE 384
D
 LYS 36SER 215
D
 ILE 217ILE 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 4J1R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
95 102Right-handed alpha
Helix 2
2
A
138 149Right-handed alpha
Helix 3
3
A
154 175Right-handed alpha
Helix 4
4
A
183 185Right-handed 310
Helix 5
5
A
219 223Right-handed 310
Helix 6
6
A
224 229Right-handed alpha
Helix 7
7
A
236 253Right-handed alpha
Helix 8
8
A
263 274Right-handed alpha
Helix 9
9
A
277 285Right-handed alpha
Helix 10
10
A
300 305Right-handed alpha
Helix 11
11
A
310 321Right-handed alpha
Helix 12
12
A
330 336Right-handed alpha
Helix 13
13
A
337 345Right-handed 310
Helix 14
14
A
370 372Right-handed 310
Helix 15
15
A
373 378Right-handed alpha
Helix 16
16
B
95 104Right-handed alpha
Helix 17
17
B
138 148Right-handed alpha
Helix 18
18
B
154 175Right-handed alpha
Helix 19
19
B
183 185Right-handed 310
Helix 20
20
B
219 223Right-handed 310
Helix 21
21
B
224 229Right-handed alpha
Helix 22
22
B
236 253Right-handed alpha
Helix 23
23
B
263 274Right-handed alpha
Helix 24
24
B
277 285Right-handed alpha
Helix 25
25
B
300 305Right-handed alpha
Helix 26
26
B
310 321Right-handed alpha
Helix 27
27
B
330 336Right-handed alpha
Helix 28
28
B
337 345Right-handed 310
Helix 29
29
B
370 372Right-handed 310
Helix 30
30
B
373 378Right-handed alpha
Helix 31
31
B
379 384Right-handed alpha
Helix 32
32
C
95 102Right-handed alpha
Helix 33
33
C
138 149Right-handed alpha
Helix 34
34
C
154 175Right-handed alpha
Helix 35
35
C
183 185Right-handed 310
Helix 36
36
C
219 223Right-handed 310
Helix 37
37
C
224 229Right-handed alpha
Helix 38
38
C
236 253Right-handed alpha
Helix 39
39
C
263 274Right-handed alpha
Helix 40
40
C
277 285Right-handed alpha
Helix 41
41
C
300 305Right-handed alpha
Helix 42
42
C
310 321Right-handed alpha
Helix 43
43
C
330 336Right-handed alpha
Helix 44
44
C
337 345Right-handed 310
Helix 45
45
C
370 372Right-handed 310
Helix 46
46
C
373 378Right-handed alpha
Helix 47
47
C
379 383Right-handed 310
Helix 48
48
D
95 104Right-handed alpha
Helix 49
49
D
138 149Right-handed alpha
Helix 50
50
D
154 175Right-handed alpha
Helix 51
51
D
183 185Right-handed 310
Helix 52
52
D
219 223Right-handed 310
Helix 53
53
D
224 229Right-handed alpha
Helix 54
54
D
236 253Right-handed alpha
Helix 55
55
D
263 274Right-handed alpha
Helix 56
56
D
277 285Right-handed alpha
Helix 57
57
D
300 305Right-handed alpha
Helix 58
58
D
310 321Right-handed alpha
Helix 59
59
D
330 336Right-handed alpha
Helix 60
60
D
337 345Right-handed 310
Helix 61
61
D
370 372Right-handed 310
Helix 62
62
D
373 378Right-handed alpha
Helix 63
63
D
379 383Right-handed 310
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There are 12 sheets in PDB entry 4J1R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 44first strand
Strand 2
A
52 64anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
81 89anti-parallel
Strand 5
A
126 133anti-parallel
Strand 6
A
112 118anti-parallel
Strand 7
A
38 44anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
205 206anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
195 198anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 44first strand
Strand 2
B
52 64anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
81 90anti-parallel
Strand 5
B
125 133anti-parallel
Strand 6
B
112 119anti-parallel
Strand 7
B
37 44anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
205 206anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 190first strand
Strand 2
B
195 198anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 44first strand
Strand 2
C
52 64anti-parallel
Strand 3
C
68 75anti-parallel
Strand 4
C
81 88anti-parallel
Strand 5
C
127 133anti-parallel
Strand 6
C
112 118anti-parallel
Strand 7
C
38 44anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 178first strand
Strand 2
C
205 206anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 190first strand
Strand 2
C
195 198anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 44first strand
Strand 2
D
52 64anti-parallel
Strand 3
D
68 75anti-parallel
Strand 4
D
81 89anti-parallel
Strand 5
D
126 133anti-parallel
Strand 6
D
112 118anti-parallel
Strand 7
D
38 44anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
177 178first strand
Strand 2
D
205 206anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
187 190first strand
Strand 2
D
195 198anti-parallel
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