Analysis of interatomic Contacts of Structural Units in PDB entry:
4J5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J5T entry

There is 1 chain in PDB entry 4J5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -2HIS 808
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4J5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-2 13Right-handed alpha
Helix 2
2
A
48 53Right-handed 310
Helix 3
3
A
58 62Right-handed 310
Helix 4
4
A
130 135Right-handed alpha
Helix 5
5
A
201 206Right-handed 310
Helix 6
6
A
207 224Right-handed alpha
Helix 7
7
A
233 235Right-handed 310
Helix 8
8
A
236 241Right-handed alpha
Helix 9
9
A
286 309Right-handed alpha
Helix 10
10
A
320 338Right-handed alpha
Helix 11
11
A
390 404Right-handed alpha
Helix 12
12
A
404 417Right-handed alpha
Helix 13
13
A
432 438Right-handed alpha
Helix 14
14
A
439 440Right-handed 310
Helix 15
15
A
441 444Right-handed 310
Helix 16
16
A
455 473Right-handed alpha
Helix 17
17
A
495 500Right-handed alpha
Helix 18
18
A
500 526Right-handed alpha
Helix 19
19
A
533 540Right-handed alpha
Helix 20
20
A
542 546Right-handed 310
Helix 21
21
A
562 566Right-handed 310
Helix 22
22
A
582 603Right-handed alpha
Helix 23
23
A
605 626Right-handed alpha
Helix 24
24
A
655 664Right-handed alpha
Helix 25
25
A
672 683Right-handed alpha
Helix 26
26
A
715 730Right-handed alpha
Helix 27
27
A
731 735Right-handed 310
Helix 28
28
A
742 766Right-handed alpha
Helix 29
29
A
788 791Right-handed 310
Helix 30
30
A
792 799Right-handed alpha
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There are 8 sheets in PDB entry 4J5T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
35 42anti-parallel
Strand 3
A
119 128anti-parallel
Strand 4
A
254 262anti-parallel
Strand 5
A
194 198anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 72first strand
Strand 2
A
76 83anti-parallel
Strand 3
A
88 96anti-parallel
Strand 4
A
103 111anti-parallel
Strand 5
A
269 277anti-parallel
Strand 6
A
160 170anti-parallel
Strand 7
A
150 156anti-parallel
Strand 8
A
138 144anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 377first strand
Strand 2
A
340 348anti-parallel
Strand 3
A
446 447parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 389first strand
Strand 2
A
429 430anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
628 629first strand
Strand 2
A
634 635anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 640first strand
Strand 2
A
648 651anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
688 689first strand
Strand 2
A
692 693anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
772 773first strand
Strand 2
A
780 781anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il