Analysis of interatomic Contacts of Structural Units in PDB entry:
4JA7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JA7 entry

There is 1 chain in PDB entry 4JA7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 23GLY 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4JA7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 41Right-handed alpha
Helix 2
2
A
43 58Right-handed alpha
Helix 3
3
A
61 75Right-handed alpha
Helix 4
4
A
77 92Right-handed alpha
Helix 5
5
A
95 109Right-handed alpha
Helix 6
6
A
111 126Right-handed alpha
Helix 7
7
A
129 149Right-handed alpha
Helix 8
8
A
160 165Right-handed 310
Helix 9
9
A
166 170Right-handed 310
Helix 10
10
A
187 200Right-handed alpha
Helix 11
11
A
205 222Right-handed alpha
Helix 12
12
A
246 258Right-handed alpha
Helix 13
13
A
278 293Right-handed alpha
Helix 14
14
A
306 314Right-handed alpha
Helix 15
15
A
314 323Right-handed alpha
Helix 16
16
A
324 336Right-handed alpha
Helix 17
17
A
362 368Right-handed alpha
Helix 18
18
A
379 387Right-handed alpha
Helix 19
19
A
407 419Right-handed alpha
Helix 20
20
A
438 440Right-handed 310
Helix 21
21
A
450 454Right-handed 310
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There are 3 sheets in PDB entry 4JA7. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 229first strand
Strand 2
A
341 344parallel
Strand 3
A
348 351anti-parallel
Strand 4
A
422 425parallel
Strand 5
A
442 445parallel
Strand 6
A
434 437anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 300first strand
Strand 2
A
266 269parallel
Strand 3
A
236 240parallel
Strand 4
A
459 465anti-parallel
Strand 5
A
468 476anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 389first strand
Strand 2
A
404 406parallel
Strand 3
A
395 397anti-parallel
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