Analysis of interatomic Contacts of Structural Units in PDB entry:
4JFH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JFH entry

There are 2 chains in PDB entry 4JFH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLN 1PRO 200
E
 SER 1ASP 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 4JFH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
80 84Right-handed 310
Helix 2
2
D
181 186Right-handed alpha
Helix 3
3
E
82 86Right-handed 310
Helix 4
4
E
116 120Right-handed 310
Helix 5
5
E
131 139Right-handed alpha
Helix 6
6
E
198 202Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 4JFH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 5first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
71 76anti-parallel
Strand 4
D
61 66anti-parallel
Strand 5
D
54 58anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
103 108parallel
Strand 3
D
85 93anti-parallel
Strand 4
D
32 38anti-parallel
Strand 5
D
45 50anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
103 108parallel
Strand 3
D
85 93anti-parallel
Strand 4
D
96 99anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
152 154first strand
Strand 2
D
169 175anti-parallel
Strand 3
D
130 137anti-parallel
Strand 4
D
117 123anti-parallel
Strand 5
E
124 129anti-parallel
Strand 6
E
140 150anti-parallel
Strand 7
E
188 197anti-parallel
Strand 8
E
170 172anti-parallel
Strand 9
D
158 159anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
152 154first strand
Strand 2
D
169 175anti-parallel
Strand 3
D
130 137anti-parallel
Strand 4
D
117 123anti-parallel
Strand 5
E
124 129anti-parallel
Strand 6
E
140 150anti-parallel
Strand 7
E
188 197anti-parallel
Strand 8
E
177 178anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
19 26anti-parallel
Strand 3
E
73 78anti-parallel
Strand 4
E
65 70anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
109 114parallel
Strand 3
E
87 94anti-parallel
Strand 4
E
32 38anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
54 57anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
109 114parallel
Strand 3
E
87 94anti-parallel
Strand 4
E
102 105anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
164 166first strand
Strand 2
E
155 161anti-parallel
Strand 3
E
207 214anti-parallel
Strand 4
E
233 240anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il