Analysis of interatomic Contacts of Structural Units in PDB entry:
4JJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JJ0 entry

There are 2 chains in PDB entry 4JJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 80GLN 260
B
 GLY 81GLN 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4JJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
103 111Right-handed alpha
Helix 2
2
A
125 131Right-handed alpha
Helix 3
3
A
149 160Right-handed alpha
Helix 4
4
A
211 215Right-handed 310
Helix 5
5
A
227 231Right-handed 310
Helix 6
6
A
251 255Right-handed 310
Helix 7
7
B
103 111Right-handed alpha
Helix 8
8
B
125 132Right-handed alpha
Helix 9
9
B
149 160Right-handed alpha
Helix 10
10
B
211 215Right-handed 310
Helix 11
11
B
227 231Right-handed 310
Helix 12
12
B
251 255Right-handed 310
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There are 6 sheets in PDB entry 4JJ0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
138 142anti-parallel
Strand 3
A
165 172anti-parallel
Strand 4
A
175 182anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
138 142anti-parallel
Strand 3
A
119 124anti-parallel
Strand 4
A
97 101anti-parallel
Strand 5
A
91 94anti-parallel
Strand 6
A
191 193anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
258 259parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
138 142anti-parallel
Strand 3
B
165 172anti-parallel
Strand 4
B
175 182anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
138 142anti-parallel
Strand 3
B
119 123anti-parallel
Strand 4
B
97 101anti-parallel
Strand 5
B
89 94anti-parallel
Strand 6
B
191 194anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
258 259parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il