Analysis of interatomic Contacts of Structural Units in PDB entry:
4JKE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JKE entry

There are 2 chains in PDB entry 4JKE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1771ASP 1990
B
 GLU 1770ALA 1989
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4JKE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1823 1828Right-handed 310
Helix 2
2
A
1832 1852Right-handed alpha
Helix 3
3
A
1853 1857Right-handed 310
Helix 4
4
A
1865 1867Right-handed 310
Helix 5
5
A
1868 1876Right-handed alpha
Helix 6
6
A
1892 1898Right-handed 310
Helix 7
7
A
1899 1909Right-handed alpha
Helix 8
8
A
1922 1926Right-handed 310
Helix 9
9
A
1928 1946Right-handed alpha
Helix 10
10
A
1946 1954Right-handed alpha
Helix 11
11
A
1972 1990Right-handed alpha
Helix 12
12
B
1826 1830Right-handed 310
Helix 13
13
B
1837 1852Right-handed alpha
Helix 14
14
B
1853 1857Right-handed 310
Helix 15
15
B
1865 1867Right-handed 310
Helix 16
16
B
1868 1876Right-handed alpha
Helix 17
17
B
1892 1898Right-handed 310
Helix 18
18
B
1899 1909Right-handed alpha
Helix 19
19
B
1922 1926Right-handed 310
Helix 20
20
B
1928 1946Right-handed alpha
Helix 21
21
B
1946 1954Right-handed alpha
Helix 22
22
B
1972 1989Right-handed alpha
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There are 2 sheets in PDB entry 4JKE. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1883 1885first strand
Strand 2
A
1860 1863parallel
Strand 3
A
1777 1781parallel
Strand 4
A
1805 1810anti-parallel
Strand 5
A
1816 1822anti-parallel
Strand 6
A
1913 1918anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1883 1886first strand
Strand 2
B
1860 1863parallel
Strand 3
B
1777 1784parallel
Strand 4
B
1805 1810anti-parallel
Strand 5
B
1816 1822anti-parallel
Strand 6
B
1913 1918anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il