Analysis of interatomic Contacts of Structural Units in PDB entry:
4JR2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JR2 entry

There are 4 chains in PDB entry 4JR2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 56SER 302
B
ALA 56SER 302
C
ASP 2ASP 5
D
ASP 2ASP 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4JR2. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
79 83Right-handed 310
Helix 2
2
A
89 105Right-handed alpha
Helix 3
3
A
115 128Right-handed alpha
Helix 4
4
A
159 164Right-handed alpha
Helix 5
5
A
165 167Right-handed 310
Helix 6
6
A
171 175Right-handed 310
Helix 7
7
A
240 253Right-handed alpha
Helix 8
8
A
257 273Right-handed alpha
Helix 9
9
A
279 283Right-handed 310
Helix 10
10
B
79 83Right-handed 310
Helix 11
11
B
89 105Right-handed alpha
Helix 12
12
B
115 129Right-handed alpha
Helix 13
13
B
159 164Right-handed alpha
Helix 14
14
B
165 167Right-handed 310
Helix 15
15
B
171 175Right-handed 310
Helix 16
16
B
240 253Right-handed alpha
Helix 17
17
B
257 273Right-handed alpha
Helix 18
18
B
279 283Right-handed 310
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There are 5 sheets in PDB entry 4JR2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
106 112first strand
Strand 2
A
68 74parallel
Strand 3
A
137 142parallel
Strand 4
A
179 184parallel
Strand 5
A
219 223parallel
Strand 6
A
290 293anti-parallel
Strand 7
B
290 293anti-parallel
Strand 8
B
219 223anti-parallel
Strand 9
B
179 184parallel
Strand 10
B
134 142parallel
Strand 11
B
66 74parallel
Strand 12
B
106 112parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
145 146first strand
Strand 2
A
149 152anti-parallel
Strand 3
A
155 158anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
238 239first strand
Strand 2
A
232 234anti-parallel
Strand 3
C
3 4anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
145 146first strand
Strand 2
B
149 152anti-parallel
Strand 3
B
155 158anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
238 239first strand
Strand 2
B
232 234anti-parallel
Strand 3
D
3 4anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il