Analysis of interatomic Contacts of Structural Units in PDB entry:
4JVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JVA entry

There is 1 chain in PDB entry 4JVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 127TYR 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4JVA. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
136 148Right-handed alpha
Helix 2
2
A
150 154Right-handed 310
Helix 3
3
A
157 168Right-handed alpha
Helix 4
4
A
221 227Right-handed alpha
Helix 5
5
A
247 270Right-handed alpha
Helix 6
6
A
271 276Right-handed 310
Helix 7
7
A
281 285Right-handed 310
Helix 8
8
A
286 290Right-handed 310
Helix 9
9
A
350 355Right-handed alpha
Helix 10
10
A
376 383Right-handed alpha
Helix 11
11
A
386 394Right-handed alpha
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There are 4 sheets in PDB entry 4JVA. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 173first strand
Strand 2
A
240 246anti-parallel
Strand 3
A
188 194anti-parallel
Strand 4
A
218 219anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
178 180first strand
Strand 2
A
233 236anti-parallel
Strand 3
A
196 203anti-parallel
Strand 4
A
206 214anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
291 295first strand
Strand 2
A
362 375anti-parallel
Strand 3
A
310 323anti-parallel
Strand 4
A
337 342anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
300 302first strand
Strand 2
A
362 375anti-parallel
Strand 3
A
310 323anti-parallel
Strand 4
A
347 348anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il