Analysis of interatomic Contacts of Structural Units in PDB entry:
4JVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JVS entry

There are 2 chains in PDB entry 4JVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 331GLN 621
B
GLU 7MET 176
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4JVS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
343 356Right-handed alpha
Helix 2
2
A
369 391Right-handed alpha
Helix 3
3
A
405 409Right-handed 310
Helix 4
4
A
427 435Right-handed alpha
Helix 5
5
A
448 450Right-handed 310
Helix 6
6
A
451 462Right-handed alpha
Helix 7
7
A
465 488Right-handed alpha
Helix 8
8
A
503 525Right-handed alpha
Helix 9
9
A
548 553Right-handed alpha
Helix 10
10
A
556 568Right-handed alpha
Helix 11
11
A
574 582Right-handed alpha
Helix 12
12
A
584 595Right-handed alpha
Helix 13
13
A
605 621Right-handed alpha
Helix 14
14
B
23 34Right-handed alpha
Helix 15
15
B
70 72Right-handed 310
Helix 16
16
B
73 79Right-handed alpha
Helix 17
17
B
95 101Right-handed alpha
Helix 18
18
B
101 113Right-handed alpha
Helix 19
19
B
135 145Right-handed alpha
Helix 20
20
B
160 175Right-handed alpha
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There are 3 sheets in PDB entry 4JVS. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
416 417first strand
Strand 2
A
420 421anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
445 446first strand
Strand 2
B
41 42anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
46 55first strand
Strand 2
B
58 67anti-parallel
Strand 3
B
10 18parallel
Strand 4
B
86 92parallel
Strand 5
B
118 124parallel
Strand 6
B
150 152parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il