Analysis of interatomic Contacts of Structural Units in PDB entry:
4JYI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JYI entry

There are 4 chains in PDB entry 4JYI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 170GLU 408
B
 SER 170GLU 408
F
 HIS 630GLN 638
G
 HIS 630GLU 639
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 4JYI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
171 190Right-handed alpha
Helix 2
2
A
194 198Right-handed 310
Helix 3
3
A
214 238Right-handed alpha
Helix 4
4
A
241 245Right-handed 310
Helix 5
5
A
246 268Right-handed alpha
Helix 6
6
A
287 294Right-handed alpha
Helix 7
7
A
295 297Right-handed 310
Helix 8
8
A
298 310Right-handed alpha
Helix 9
9
A
311 313Right-handed 310
Helix 10
10
A
315 328Right-handed alpha
Helix 11
11
A
337 360Right-handed alpha
Helix 12
12
A
365 372Right-handed alpha
Helix 13
13
A
372 393Right-handed alpha
Helix 14
14
A
400 408Right-handed alpha
Helix 15
15
B
174 190Right-handed alpha
Helix 16
16
B
194 198Right-handed 310
Helix 17
17
B
214 238Right-handed alpha
Helix 18
18
B
241 245Right-handed 310
Helix 19
19
B
246 268Right-handed alpha
Helix 20
20
B
287 294Right-handed alpha
Helix 21
21
B
295 297Right-handed 310
Helix 22
22
B
298 310Right-handed alpha
Helix 23
23
B
311 313Right-handed 310
Helix 24
24
B
315 328Right-handed alpha
Helix 25
25
B
337 360Right-handed alpha
Helix 26
26
B
365 372Right-handed alpha
Helix 27
27
B
372 395Right-handed alpha
Helix 28
28
B
400 408Right-handed alpha
Helix 29
29
F
631 638Right-handed alpha
Helix 30
30
G
631 639Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4JYI. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
276 278anti-parallel
Strand 3
A
284 286anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
276 278anti-parallel
Strand 3
B
284 286anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il