Analysis of interatomic Contacts of Structural Units in PDB entry:
4JYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JYY entry

There is 1 chain in PDB entry 4JYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 29LEU 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4JYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 59Right-handed alpha
Helix 2
2
A
59 73Right-handed alpha
Helix 3
3
A
74 81Right-handed 310
Helix 4
4
A
82 89Right-handed alpha
Helix 5
5
A
90 93Right-handed 310
Helix 6
6
A
94 117Right-handed alpha
Helix 7
7
A
126 138Right-handed alpha
Helix 8
8
A
139 154Right-handed alpha
Helix 9
9
A
180 185Right-handed 310
Helix 10
10
A
195 198Right-handed 310
Helix 11
11
A
199 204Right-handed alpha
Helix 12
12
A
206 215Right-handed alpha
Helix 13
13
A
219 229Right-handed alpha
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There is 1 sheet ( A) in PDB entry 4JYY.

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 176first strand
Strand 2
A
158 164anti-parallel
Strand 3
A
187 193anti-parallel
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