Analysis of interatomic Contacts of Structural Units in PDB entry:
4KMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KMD entry

There are 2 chains in PDB entry 4KMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28ASP 480
B
 GLY 119THR 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 4KMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 45Right-handed alpha
Helix 2
2
A
59 63Right-handed 310
Helix 3
3
A
79 83Right-handed 310
Helix 4
4
A
135 152Right-handed alpha
Helix 5
5
A
204 214Right-handed alpha
Helix 6
6
A
215 225Right-handed alpha
Helix 7
7
A
226 230Right-handed 310
Helix 8
8
A
243 248Right-handed alpha
Helix 9
9
A
249 263Right-handed alpha
Helix 10
10
A
374 379Right-handed alpha
Helix 11
11
A
380 388Right-handed alpha
Helix 12
12
A
389 392Right-handed 310
Helix 13
13
A
436 447Right-handed alpha
Helix 14
14
A
465 467Right-handed 310
Helix 15
15
A
475 480Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 4KMD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
70 76anti-parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
113 125anti-parallel
Strand 5
A
193 203parallel
Strand 6
A
188 190anti-parallel
Back to list of sheets
Back to top of page

There are 14 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
70 76anti-parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
113 125anti-parallel
Strand 5
A
193 203parallel
Strand 6
A
176 181anti-parallel
Strand 7
A
160 161anti-parallel
Strand 8
B
120 123parallel
Strand 9
A
266 271parallel
Strand 10
A
395 399parallel
Strand 11
A
405 409anti-parallel
Strand 12
A
430 434parallel
Strand 13
A
424 427anti-parallel
Strand 14
A
364 365anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 276first strand
Strand 2
A
369 373anti-parallel
Strand 3
A
469 473parallel
Strand 4
A
460 464anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il