Analysis of interatomic Contacts of Structural Units in PDB entry:
4LML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4LML entry

There are 5 chains in PDB entry 4LML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 7	PHE 316
B	PRO 7	PHE 316
C	PRO 7	PHE 316
D	PRO 7	PHE 316
E	PRO 7	PHE 316

There are 40 helices in PDB entry 4LML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	66	70	Right-handed 310
Helix 2	2	A	143	148	Right-handed alpha
Helix 3	3	A	195	200	Right-handed alpha
Helix 4	4	A	200	213	Right-handed alpha
Helix 5	5	A	214	217	Right-handed 310
Helix 6	6	A	219	244	Right-handed alpha
Helix 7	7	A	253	280	Right-handed alpha
Helix 8	8	A	283	314	Right-handed alpha
Helix 9	9	B	66	70	Right-handed 310
Helix 10	10	B	143	148	Right-handed alpha
Helix 11	11	B	195	200	Right-handed alpha
Helix 12	12	B	200	213	Right-handed alpha
Helix 13	13	B	214	217	Right-handed 310
Helix 14	14	B	219	244	Right-handed alpha
Helix 15	15	B	252	281	Right-handed alpha
Helix 16	16	B	283	314	Right-handed alpha
Helix 17	17	C	49	52	Right-handed 310
Helix 18	18	C	66	70	Right-handed 310
Helix 19	19	C	143	148	Right-handed alpha
Helix 20	20	C	195	200	Right-handed alpha
Helix 21	21	C	200	212	Right-handed alpha
Helix 22	22	C	213	217	Right-handed 310
Helix 23	23	C	219	244	Right-handed alpha
Helix 24	24	C	252	281	Right-handed alpha
Helix 25	25	C	283	314	Right-handed alpha
Helix 26	26	D	195	200	Right-handed alpha
Helix 27	27	D	200	213	Right-handed alpha
Helix 28	28	D	214	217	Right-handed 310
Helix 29	29	D	219	244	Right-handed alpha
Helix 30	30	D	252	281	Right-handed alpha
Helix 31	31	D	283	314	Right-handed alpha
Helix 32	32	E	49	52	Right-handed 310
Helix 33	33	E	66	70	Right-handed 310
Helix 34	34	E	143	148	Right-handed alpha
Helix 35	35	E	195	200	Right-handed alpha
Helix 36	36	E	200	213	Right-handed alpha
Helix 37	37	E	214	217	Right-handed 310
Helix 38	38	E	219	244	Right-handed alpha
Helix 39	39	E	253	281	Right-handed alpha
Helix 40	40	E	283	314	Right-handed alpha

There are 17 sheets in PDB entry 4LML. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	19	first strand
Strand 2	A	138	142	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	30	first strand
Strand 2	A	35	47	anti-parallel
Strand 3	A	98	110	anti-parallel
Strand 4	A	85	93	anti-parallel
Strand 5	A	63	64	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	77	first strand
Strand 2	A	122	132	anti-parallel
Strand 3	A	179	191	anti-parallel
Strand 4	A	159	166	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	77	first strand
Strand 2	A	122	132	anti-parallel
Strand 3	A	179	191	anti-parallel
Strand 4	A	171	174	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	19	first strand
Strand 2	B	138	142	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	30	first strand
Strand 2	B	35	47	anti-parallel
Strand 3	B	98	110	anti-parallel
Strand 4	B	85	93	anti-parallel
Strand 5	B	63	64	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	77	first strand
Strand 2	B	122	132	anti-parallel
Strand 3	B	179	191	anti-parallel
Strand 4	B	159	174	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	19	first strand
Strand 2	C	138	142	parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	30	first strand
Strand 2	C	35	47	anti-parallel
Strand 3	C	98	110	anti-parallel
Strand 4	C	85	93	anti-parallel
Strand 5	C	63	64	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	77	first strand
Strand 2	C	122	132	anti-parallel
Strand 3	C	179	191	anti-parallel
Strand 4	C	159	166	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	77	first strand
Strand 2	C	122	132	anti-parallel
Strand 3	C	179	191	anti-parallel
Strand 4	C	171	174	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	19	first strand
Strand 2	D	138	142	parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	85	93	anti-parallel
Strand 3	D	98	110	anti-parallel
Strand 4	D	35	47	anti-parallel
Strand 5	D	21	30	anti-parallel
Strand 6	D	149	150	parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	77	first strand
Strand 2	D	122	132	anti-parallel
Strand 3	D	179	191	anti-parallel
Strand 4	D	159	174	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	19	first strand
Strand 2	E	138	142	parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	30	first strand
Strand 2	E	35	47	anti-parallel
Strand 3	E	98	110	anti-parallel
Strand 4	E	85	93	anti-parallel
Strand 5	E	63	64	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	77	first strand
Strand 2	E	122	132	anti-parallel
Strand 3	E	179	191	anti-parallel
Strand 4	E	159	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4LML

Analysis of interatomic Contacts of Structural Units in PDB entry:
4LML