Analysis of interatomic Contacts of Structural Units in PDB entry:
4LTS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LTS entry

There are 2 chains in PDB entry 4LTS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 8GLU 487
B
GLU 8ALA 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 4LTS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
16 25Right-handed 310
Helix 3
3
A
61 70Right-handed alpha
Helix 4
4
A
76 92Right-handed alpha
Helix 5
5
A
97 109Right-handed alpha
Helix 6
6
A
138 142Right-handed 310
Helix 7
7
A
143 148Right-handed alpha
Helix 8
8
A
148 154Right-handed alpha
Helix 9
9
A
155 181Right-handed alpha
Helix 10
10
A
185 188Right-handed 310
Helix 11
11
A
194 198Right-handed 310
Helix 12
12
A
200 212Right-handed alpha
Helix 13
13
A
221 231Right-handed alpha
Helix 14
14
A
246 252Right-handed alpha
Helix 15
15
A
253 256Right-handed 310
Helix 16
16
A
257 269Right-handed alpha
Helix 17
17
A
282 289Right-handed alpha
Helix 18
18
A
295 300Right-handed alpha
Helix 19
19
A
316 332Right-handed alpha
Helix 20
20
A
357 371Right-handed alpha
Helix 21
21
A
374 376Right-handed 310
Helix 22
22
A
383 388Right-handed alpha
Helix 23
23
A
420 424Right-handed 310
Helix 24
24
A
446 451Right-handed 310
Helix 25
25
A
472 480Right-handed alpha
Helix 26
26
A
482 487Right-handed alpha
Helix 27
27
B
10 14Right-handed 310
Helix 28
28
B
16 25Right-handed 310
Helix 29
29
B
61 70Right-handed alpha
Helix 30
30
B
76 92Right-handed alpha
Helix 31
31
B
97 109Right-handed alpha
Helix 32
32
B
138 142Right-handed 310
Helix 33
33
B
143 148Right-handed alpha
Helix 34
34
B
148 154Right-handed alpha
Helix 35
35
B
155 181Right-handed alpha
Helix 36
36
B
185 188Right-handed 310
Helix 37
37
B
194 198Right-handed 310
Helix 38
38
B
200 212Right-handed alpha
Helix 39
39
B
221 231Right-handed alpha
Helix 40
40
B
246 252Right-handed alpha
Helix 41
41
B
253 256Right-handed 310
Helix 42
42
B
257 269Right-handed alpha
Helix 43
43
B
282 289Right-handed alpha
Helix 44
44
B
295 300Right-handed alpha
Helix 45
45
B
316 332Right-handed alpha
Helix 46
46
B
357 371Right-handed alpha
Helix 47
47
B
374 376Right-handed 310
Helix 48
48
B
383 388Right-handed alpha
Helix 49
49
B
420 424Right-handed 310
Helix 50
50
B
446 451Right-handed 310
Helix 51
51
B
472 480Right-handed alpha
Helix 52
52
B
482 487Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 4LTS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
409 412first strand
Strand 2
A
397 406anti-parallel
Strand 3
A
30 39anti-parallel
Strand 4
A
130 136anti-parallel
Strand 5
A
114 118anti-parallel
Strand 6
A
459 463anti-parallel
Strand 7
A
466 467anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
56 58first strand
Strand 2
A
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
190 192first strand
Strand 2
A
378 382parallel
Strand 3
A
348 352parallel
Strand 4
A
308 311parallel
Strand 5
A
274 277parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
335 336first strand
Strand 2
A
342 343anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
431 434first strand
Strand 2
A
440 443anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
409 412first strand
Strand 2
B
397 406anti-parallel
Strand 3
B
30 39anti-parallel
Strand 4
B
130 136anti-parallel
Strand 5
B
114 118anti-parallel
Strand 6
B
459 463anti-parallel
Strand 7
B
466 467anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
56 58first strand
Strand 2
B
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
190 192first strand
Strand 2
B
378 382parallel
Strand 3
B
348 352parallel
Strand 4
B
308 311parallel
Strand 5
B
274 277parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
335 336first strand
Strand 2
B
342 343anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
431 434first strand
Strand 2
B
440 443anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il