Analysis of interatomic Contacts of Structural Units in PDB entry:
4M1W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M1W entry

There are 3 chains in PDB entry 4M1W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1GLU 168
B
MET 1GLU 168
C
MET 1LYS 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 4M1W. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 26Right-handed alpha
Helix 2
2
A
66 75Right-handed alpha
Helix 3
3
A
86 92Right-handed alpha
Helix 4
4
A
92 105Right-handed alpha
Helix 5
5
A
126 138Right-handed alpha
Helix 6
6
A
151 168Right-handed alpha
Helix 7
7
B
15 26Right-handed alpha
Helix 8
8
B
64 75Right-handed alpha
Helix 9
9
B
86 92Right-handed alpha
Helix 10
10
B
92 104Right-handed alpha
Helix 11
11
B
126 138Right-handed alpha
Helix 12
12
B
151 168Right-handed alpha
Helix 13
13
C
15 26Right-handed alpha
Helix 14
14
C
59 61Right-handed 310
Helix 15
15
C
64 75Right-handed alpha
Helix 16
16
C
86 92Right-handed alpha
Helix 17
17
C
92 105Right-handed alpha
Helix 18
18
C
126 138Right-handed alpha
Helix 19
19
C
151 167Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4M1W. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
39 46first strand
Strand 2
A
49 58anti-parallel
Strand 3
A
2 9parallel
Strand 4
A
77 83parallel
Strand 5
A
111 116parallel
Strand 6
A
141 143parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
41 46first strand
Strand 2
B
49 55anti-parallel
Strand 3
B
2 10parallel
Strand 4
B
77 83parallel
Strand 5
B
111 116parallel
Strand 6
B
141 143parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
40 46first strand
Strand 2
C
49 57anti-parallel
Strand 3
C
2 10parallel
Strand 4
C
77 83parallel
Strand 5
C
111 116parallel
Strand 6
C
141 143parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il